Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015137.1 Corchorus olitorius cultivar O-4 contig15170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7042
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:1164 original size:15 final size:15

Alignment explanation


    Indices: 1144--1180  Score: 74
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1134 TATAATTAGA

                           
       1144 TTATATTTTGAGCAT
          1 TTATATTTTGAGCAT

                           
       1159 TTATATTTTGAGCAT
          1 TTATATTTTGAGCAT

                   
       1174 TTATATT
          1 TTATATT

       1181 GCACTTTCTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57


Consensus pattern (15 bp):   
TTATATTTTGAGCAT
Done.