Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015138.1 Corchorus olitorius cultivar O-4 contig15171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20064

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--433
90
2.0
89
92
3
295
50
6
6
37
1.54
474--503
6
4.8
6
95
4
51
50
0
13
36
1.42
1820--1848
10
3.0
10
95
5
51
31
0
0
68
0.89
3906--3944
11
3.5
11
85
0
51
0
10
5
84
0.76
5193--5230
7
5.1
7
87
12
58
81
18
0
0
0.69
5194--5229
8
4.6
8
86
6
56
86
13
0
0
0.58
5193--5230
15
2.5
15
95
0
67
81
18
0
0
0.69
6272--6315
22
2.1
20
91
8
70
52
0
4
43
1.22
6272--6311
11
3.6
11
79
0
53
52
0
2
45
1.14
7645--7684
20
2.0
20
100
0
80
30
5
15
50
1.65

Tables:   1

The End!