Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015141.1 Corchorus olitorius cultivar O-4 contig15174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8257
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33


Found at i:7972 original size:15 final size:15

Alignment explanation


    Indices: 7944--7990  Score: 58
    Period size: 15  Copynumber: 3.1  Consensus size: 15

       7934 ACCGTTTCCG

                     *     
       7944 TTATTGTTCACACCA
          1 TTATTGTTCGCACCA

                 *         
       7959 TTATTATTCGCACCA
          1 TTATTGTTCGCACCA

              *     *      
       7974 TTGTTGTTTGCACCA
          1 TTATTGTTCGCACCA

              
       7989 TT
          1 TT

       7991 CACCCTAGCA


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.21, C:0.23, G:0.11, T:0.45


Consensus pattern (15 bp):   
TTATTGTTCGCACCA
Done.