Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015142.1 Corchorus olitorius cultivar O-4 contig15175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36808

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--314
49
2.8
47
81
10
157
51
5
14
27
1.65
193--309
49
2.4
50
87
5
161
52
5
15
26
1.63
1591--1620
9
3.3
9
90
0
51
33
23
0
43
1.54
3481--3540
23
3.0
20
74
25
63
33
0
10
56
1.32
3481--3540
22
2.9
19
75
17
66
33
0
10
56
1.32
4853--4887
18
1.9
18
94
0
61
51
11
8
28
1.67
4938--4966
2
15.0
2
92
7
51
48
0
0
51
1.00
5262--5293
16
2.0
16
93
0
55
46
0
0
53
1.00
5264--5314
18
2.8
18
82
8
50
54
0
0
45
0.99
5339--5412
35
2.1
35
94
0
130
47
17
13
21
1.82
5512--5557
24
2.0
23
82
4
56
21
28
21
28
1.99
10746--10784
14
2.9
13
80
3
51
53
2
2
41
1.28
10770--11025
123
2.0
128
88
6
387
50
1
11
37
1.47
23335--23376
17
2.5
17
88
7
59
21
19
23
35
1.96
25675--25748
25
3.0
25
100
0
148
12
32
20
35
1.89
29400--30452
527
2.0
526
94
0
1865
35
17
21
25
1.95
32624--32696
29
2.5
30
75
4
78
43
36
10
8
1.70

Tables:   1

The End!