Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015146.1 Corchorus olitorius cultivar O-4 contig15179, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28577

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54--139
44
1.9
45
92
2
147
50
8
4
37
1.53
130--176
25
1.9
24
95
4
85
29
6
8
55
1.55
958--1027
36
1.9
36
91
0
113
60
8
10
21
1.55
2299--2408
58
1.9
58
85
7
152
35
19
12
32
1.89
4850--5097
123
1.9
128
88
7
380
49
1
11
37
1.48
8280--8319
11
3.7
11
96
3
73
0
27
60
12
1.33
11720--11772
27
2.0
27
92
0
88
26
16
33
22
1.96
17010--17155
73
2.0
73
83
2
186
26
19
13
41
1.88
20148--20172
10
2.5
10
100
0
50
44
36
20
0
1.52
21408--21453
24
2.0
23
87
12
67
8
8
4
78
1.09
27514--27540
4
6.8
4
100
0
54
51
0
0
48
1.00

Tables:   1

The End!