genome.fa.s15149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015149.1 Corchorus olitorius cultivar O-4 contig15182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  262315

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15241--15279	18	2.2	18	100	0	78	5	23	51	20	1.67
16926--17188	130	2.0	130	89	3	404	37	10	2	49	1.49
19483--19512	5	6.0	5	100	0	60	80	0	0	20	0.72
27270--27302	1	33.0	1	100	0	66	100	0	0	0	0.00
30069--30209	69	2.0	70	91	4	230	34	12	16	37	1.85
39494--39572	30	2.6	30	86	4	106	41	15	25	17	1.88
57354--57421	35	1.9	35	93	0	118	16	8	35	39	1.79
57924--58081	60	2.6	60	91	0	253	38	14	15	31	1.88
57920--58023	31	3.4	30	70	15	97	37	13	17	31	1.88
57955--58053	29	3.3	29	71	15	94	37	13	18	31	1.89
58130--58285	60	2.6	60	85	2	224	28	16	15	39	1.89
65902--66038	60	2.3	60	87	2	204	33	18	17	30	1.94
66000--66079	41	2.0	41	89	0	124	27	20	22	30	1.98
66154--66258	31	3.5	31	70	10	99	28	19	16	36	1.93
66157--66326	60	2.8	60	89	0	252	32	18	12	35	1.88
67632--67700	33	2.1	33	83	5	86	46	11	7	34	1.68
74862--74917	21	2.7	21	82	0	76	37	39	17	5	1.73
79516--79577	31	2.0	31	90	0	97	29	20	6	43	1.77
85877--85952	30	2.7	28	75	15	75	55	1	0	43	1.08
85871--85952	19	4.3	20	73	14	68	53	1	0	45	1.08
85870--85951	12	6.0	14	70	23	59	54	1	0	43	1.07
100891--100929	4	9.8	4	89	10	62	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102512--102689	30	5.9	30	96	0	311	15	26	26	31	1.95
104450--104483	5	6.8	5	100	0	68	82	0	0	17	0.67
107567--107632	34	1.9	34	96	0	123	21	16	16	45	1.85
107756--107813	19	2.9	19	87	5	80	29	22	12	36	1.90
107978--108049	36	2.0	36	100	0	144	36	22	5	36	1.78
111200--111291	27	3.4	27	98	0	175	13	28	27	31	1.93
128329--128556	67	3.3	69	88	4	336	21	28	23	26	1.99
132424--132568	75	1.9	75	94	0	254	35	22	11	31	1.89
133765--133823	29	2.0	30	86	3	84	50	5	3	40	1.41
134638--134894	101	2.5	103	80	12	287	42	10	7	40	1.66
148462--148491	6	5.0	6	91	0	51	46	0	20	33	1.51
159156--159314	82	1.9	83	88	3	241	33	20	17	27	1.95
165114--165339	112	2.0	112	98	0	434	30	19	20	29	1.97
171957--172002	20	2.3	20	82	14	51	60	6	0	32	1.22
179978--180039	29	2.1	29	100	0	124	27	14	9	48	1.75
186518--186557	2	20.0	2	94	0	71	47	0	2	50	1.14
202701--202770	24	2.9	24	93	0	122	42	20	20	17	1.89
206226--206252	2	13.5	2	100	0	54	51	0	0	48	1.00
207692--207738	17	2.7	17	83	3	58	55	10	4	29	1.53
207727--207814	38	2.3	38	98	0	167	45	5	7	40	1.57
208490--208550	32	1.9	32	96	0	113	29	31	0	39	1.57
209654--209725	32	2.3	30	84	13	99	34	6	11	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209670--209733	32	2.0	32	96	0	119	35	6	9	48	1.61
210046--210146	29	3.4	29	68	10	87	31	18	20	28	1.97
210016--210175	60	2.7	60	92	0	257	35	17	20	27	1.95
210075--210175	31	3.3	31	68	15	93	34	17	20	26	1.95
210214--210320	31	3.5	31	69	14	96	25	19	18	36	1.95
210220--210380	60	2.7	60	84	1	216	26	18	18	37	1.93
210964--211278	159	2.0	159	96	0	576	36	27	12	23	1.91
218571--218626	26	2.2	26	93	0	94	23	21	5	50	1.69
218780--218838	28	2.1	28	93	0	100	37	15	37	10	1.81
219167--219201	17	2.1	17	100	0	70	22	11	22	42	1.85
221243--221298	21	2.8	19	86	5	76	35	10	23	30	1.89
229688--229719	15	2.1	15	94	0	55	40	9	25	25	1.85
229888--229965	30	2.8	27	75	11	84	46	20	15	17	1.84
230385--230439	28	1.9	29	88	3	85	30	7	25	36	1.83
241957--242001	21	2.1	22	87	4	65	80	2	11	6	0.99
252059--252093	17	2.1	17	100	0	70	37	22	11	28	1.89
258178--258237	19	3.0	21	78	9	79	28	21	13	36	1.91
261180--261228	3	16.3	3	100	0	98	32	0	0	67	0.91
262077--262105	2	14.5	2	100	0	58	48	0	0	51	1.00

Tables:   1

The End!