Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015154.1 Corchorus olitorius cultivar O-4 contig15187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85816

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
577--635
31
1.9
31
86
6
84
44
16
11
27
1.83
1188--1271
42
2.0
40
93
4
141
51
8
3
36
1.50
2323--2392
36
1.9
36
88
5
106
61
7
10
21
1.51
4653--4762
58
1.9
58
88
3
168
30
23
14
30
1.94
19934--19988
17
3.5
17
69
23
57
49
9
0
41
1.34
19936--19982
14
3.3
14
72
16
51
51
6
0
42
1.27
23729--23766
11
3.5
11
89
10
51
39
0
2
57
1.12
25796--25851
29
1.9
29
96
0
103
8
7
42
41
1.63
27225--27261
5
7.4
5
93
0
65
0
21
0
78
0.75
28772--28804
15
2.1
17
88
11
52
21
3
18
57
1.53
29883--30461
195
3.0
191
87
5
823
34
10
16
39
1.82
30962--30988
12
2.2
12
100
0
54
48
0
0
51
1.00
34394--34418
3
8.3
3
100
0
50
68
0
32
0
0.90
46611--46871
106
2.5
104
91
2
398
41
8
8
41
1.65
49690--49742
27
2.0
27
100
0
106
26
7
28
37
1.83
49831--49938
53
2.0
53
92
0
180
27
31
18
22
1.97
52522--52556
3
11.7
3
93
0
61
0
37
0
62
0.95
58653--58955
101
3.0
101
97
0
561
37
10
19
32
1.85
60910--60969
30
2.0
31
83
3
77
6
56
10
26
1.57
65262--65291
6
5.0
6
100
0
60
33
0
33
33
1.58
72789--72831
19
2.3
19
84
4
52
58
0
9
32
1.30
77738--77762
8
3.1
8
100
0
50
88
0
12
0
0.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80290--80520
119
1.9
119
84
1
311
35
19
13
31
1.90
84691--84824
13
10.3
13
77
6
128
38
15
14
30
1.88
84696--84808
39
2.9
39
85
7
158
37
15
15
32
1.88

Tables:   1

The End!