Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015155.1 Corchorus olitorius cultivar O-4 contig15188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49421
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:3580 original size:10 final size:10
Alignment explanation
Indices: 3565--3597 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
3555 TTAGTTCCTT
*
3565 TATATATATA
1 TATATATGTA
3575 TATATATGTA
1 TATATATGTA
3585 TATATATGTA
1 TATATATGTA
3595 TAT
1 TAT
3598 TGCGCATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:4902 original size:17 final size:18
Alignment explanation
Indices: 4880--4916 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
4870 GCAGTGTCTA
4880 AATTTTTGGATG-GACTG
1 AATTTTTGGATGAGACTG
4897 AATTTTTGGATGAGACTG
1 AATTTTTGGATGAGACTG
4915 AA
1 AA
4917 GAAACTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (18 bp):
AATTTTTGGATGAGACTG
Found at i:7617 original size:2 final size:2
Alignment explanation
Indices: 7568--7601 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7558 TATTTTCAAG
*
7568 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7602 CACACACACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:8248 original size:24 final size:24
Alignment explanation
Indices: 8216--8281 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 24
8206 TGATGATAAG
* *
8216 GAAACCCTTGTAGAAATCCAAAAT
1 GAAACCCTTGAAGAAACCCAAAAT
* *
8240 GAAAGCCTTGAAGAAACCCAAGAT
1 GAAACCCTTGAAGAAACCCAAAAT
* * *
8264 GAGACCCATGATGAAACC
1 GAAACCCTTGAAGAAACC
8282 GAAGCAACCC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.44, C:0.23, G:0.18, T:0.15
Consensus pattern (24 bp):
GAAACCCTTGAAGAAACCCAAAAT
Found at i:10710 original size:2 final size:2
Alignment explanation
Indices: 10699--10734 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
10689 CCTATATTAG
10699 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10735 ATACACATCC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10725 original size:23 final size:23
Alignment explanation
Indices: 10691--10734 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10681 CGGCCCGACC
10691 TATATTAGTATATAATATATATA
1 TATATTAGTATATAATATATATA
*
10714 TATATATA-TATATATTATATA
1 TATAT-TAGTATATAATATATA
10735 ATACACATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TATATTAGTATATAATATATATA
Found at i:11438 original size:12 final size:12
Alignment explanation
Indices: 11420--11453 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
11410 AAGCGTTGAA
11420 GAAACCCAAGAT
1 GAAACCCAAGAT
* *
11432 GAGACCCATGAT
1 GAAACCCAAGAT
11444 GAAACCCAAG
1 GAAACCCAAG
11454 CAACCCACGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.44, C:0.26, G:0.21, T:0.09
Consensus pattern (12 bp):
GAAACCCAAGAT
Found at i:11468 original size:21 final size:23
Alignment explanation
Indices: 11417--11471 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 23
11407 TGAAAGCGTT
* *
11417 GAAGAAACCCAAGATGAGACCCAT
1 GAAGAAACCCAAGA-CAGACCCAC
*
11441 GATGAAACCCAAG-CA-ACCCAC
1 GAAGAAACCCAAGACAGACCCAC
11462 GAAGAAACCC
1 GAAGAAACCC
11472 CTACAGGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 14 0.52
22 1 0.04
24 12 0.44
ACGTcount: A:0.45, C:0.31, G:0.18, T:0.05
Consensus pattern (23 bp):
GAAGAAACCCAAGACAGACCCAC
Found at i:13120 original size:12 final size:12
Alignment explanation
Indices: 13103--13164 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
13093 TTTTGGTCTA
*
13103 CCACGATGAAAC
1 CCACGAAGAAAC
13115 CCACGATA-AAAC
1 CCACGA-AGAAAC
*
13127 CCAAGAAGAAAC
1 CCACGAAGAAAC
*
13139 CTACGAAGAAAC
1 CCACGAAGAAAC
*
13151 CCATGAAGAAAC
1 CCACGAAGAAAC
13163 CC
1 CC
13165 TTATAGGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
11 1 0.02
12 41 0.98
ACGTcount: A:0.48, C:0.31, G:0.15, T:0.06
Consensus pattern (12 bp):
CCACGAAGAAAC
Found at i:15767 original size:31 final size:31
Alignment explanation
Indices: 15732--15791 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
15722 AGGTAATTTT
* *
15732 TGTTTGGCTAATTGCTCAAATAAGGGCCTAA
1 TGTTTGGCAAAATGCTCAAATAAGGGCCTAA
15763 TGTTTGGCAAAATGCTCAAATAAGGGCCT
1 TGTTTGGCAAAATGCTCAAATAAGGGCCT
15792 GATCTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (31 bp):
TGTTTGGCAAAATGCTCAAATAAGGGCCTAA
Found at i:15820 original size:60 final size:59
Alignment explanation
Indices: 15748--15911 Score: 238
Period size: 60 Copynumber: 2.7 Consensus size: 59
15738 GCTAATTGCT
* *
15748 CAAATAAGGGCCTAATGTTTGGCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTCG-AAAATGCTCAAATAAGGGCCTGATCTTTTAATTTGGC
* * * *
15808 CAAATAAAGGCCTAACATTATCGAAAATGCTCAAATAAGGGCCCGGTCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTT-TCGAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTGGC
*
15868 CAAATAAGGGCCTAACGTAATCGAAAATGCTCAAATAAGGGCCT
1 CAAATAAGGGCCTAACGT-TTCGAAAATGCTCAAATAAGGGCCT
15912 AGCGTCAGTT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
60 90 0.98
61 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (59 bp):
CAAATAAGGGCCTAACGTTTCGAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTGGC
Found at i:15988 original size:31 final size:31
Alignment explanation
Indices: 15953--16053 Score: 102
Period size: 31 Copynumber: 3.3 Consensus size: 31
15943 CAACGTCAAA
15953 CCCTTATTTGAGCATTTTCAATAACGTTAGG
1 CCCTTATTTGAGCATTTTCAATAACGTTAGG
** *
15984 CCCTTATTTG-GCTAAATT-AA-AA-GATCAGG
1 CCCTTATTTGAGC-ATTTTCAATAACG-TTAGG
*
16013 CCCTTATTTGAGCATTTTCGATAACGTTAGG
1 CCCTTATTTGAGCATTTTCAATAACGTTAGG
**
16044 AACTTATTTG
1 CCCTTATTTG
16054 GCCAAATTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
28 1 0.02
29 19 0.35
30 7 0.13
31 27 0.49
32 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (31 bp):
CCCTTATTTGAGCATTTTCAATAACGTTAGG
Found at i:16103 original size:60 final size:61
Alignment explanation
Indices: 15952--16115 Score: 237
Period size: 60 Copynumber: 2.7 Consensus size: 61
15942 TCAACGTCAA
*
15952 ACCCTTATTTGAGCA-TTTT-CAATAACGTTAGGCCCTTATTTGGCTAAATTAAAAGATCAG
1 ACCCTTATTTGAGCATTTTTGC-ATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCAG
* * **
16012 GCCCTTATTTGAGCATTTTCG-ATAACGTTAGGAACTTATTTGGCCAAATTAAAAGATCAG
1 ACCCTTATTTGAGCATTTTTGCATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCAG
*
16072 ACCCTTATTTGAGCATTTTTGCA-AACATTAGGCCCTTATTTGGC
1 ACCCTTATTTGAGCATTTTTGCATAACGTTAGGCCCTTATTTGGC
16116 GCCTTTTATT
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
60 87 0.96
61 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (61 bp):
ACCCTTATTTGAGCATTTTTGCATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCAG
Found at i:16526 original size:16 final size:15
Alignment explanation
Indices: 16488--16529 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
16478 ACAGAGATTG
*
16488 ACAGAAAGCAATTAA
1 ACAGAAAACAATTAA
16503 ACAGAAAACAATTAA
1 ACAGAAAACAATTAA
16518 ACTAGAAAACAA
1 AC-AGAAAACAA
16530 AGCAAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12
Consensus pattern (15 bp):
ACAGAAAACAATTAA
Found at i:22365 original size:24 final size:26
Alignment explanation
Indices: 22338--22392 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22328 TTCAGAAAAA
*
22338 ACGCAG-AA-AAACTTTTTTTTTATG
1 ACGCAGAAACAAAATTTTTTTTTATG
22362 ACGCAGAAACAAAATTTTTTTTTATG
1 ACGCAGAAACAAAATTTTTTTTTATG
22388 ACGCA
1 ACGCA
22393 ATTTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 6 0.21
25 2 0.07
26 20 0.71
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (26 bp):
ACGCAGAAACAAAATTTTTTTTTATG
Found at i:22400 original size:19 final size:19
Alignment explanation
Indices: 22374--22412 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
22364 GCAGAAACAA
*
22374 AATTTTTTTTTAT-GACGC
1 AATTTTTTTTTTTCGACGC
22392 AATTTTTTTTTTTCGACGC
1 AATTTTTTTTTTTCGACGC
22411 AA
1 AA
22413 AACACAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.54
Consensus pattern (19 bp):
AATTTTTTTTTTTCGACGC
Found at i:33271 original size:17 final size:17
Alignment explanation
Indices: 33246--33280 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33236 CTAAATTTTC
33246 AATTATTATATATTATA
1 AATTATTATATATTATA
* *
33263 AATTTTTATTTATTATA
1 AATTATTATATATTATA
33280 A
1 A
33281 TAAACTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTATTATATATTATA
Found at i:35106 original size:17 final size:16
Alignment explanation
Indices: 35086--35133 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
35076 CCTTTCCCTT
35086 CCTTCTTATTTTCTTTA
1 CCTTCTTA-TTTCTTTA
* *
35103 CCTTGTTATTTCTTTT
1 CCTTCTTATTTCTTTA
35119 CCTT-TCTATTTCTTT
1 CCTTCT-TATTTCTTT
35134 CCTCCCTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 1 0.04
16 20 0.71
17 7 0.25
ACGTcount: A:0.08, C:0.23, G:0.02, T:0.67
Consensus pattern (16 bp):
CCTTCTTATTTCTTTA
Found at i:37269 original size:2 final size:2
Alignment explanation
Indices: 37264--37291 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37254 TAACTCATTA
37264 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37292 TATGTGAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41951 original size:22 final size:21
Alignment explanation
Indices: 41925--41972 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
41915 AGGTTACTAA
41925 TAAAAAGGCTTATAAGCTTAC
1 TAAAAAGGCTTATAAGCTTAC
* * *
41946 TAAAAATGCTTATGAGCTTCC
1 TAAAAAGGCTTATAAGCTTAC
41967 TAAAAA
1 TAAAAA
41973 AGTTTTTACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (21 bp):
TAAAAAGGCTTATAAGCTTAC
Found at i:42866 original size:29 final size:29
Alignment explanation
Indices: 42830--42928 Score: 103
Period size: 29 Copynumber: 3.3 Consensus size: 29
42820 CCAAAATGCT
42830 CAAATAAGGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCCGATCTTTTAATTTGGC
* * **
42859 CAAATAAGGG-CCTAACGTTATTGAAAAT-GC
1 CAAATAAGGGCCCGATC-TT-TT-AATTTGGC
*
42889 TCAAATAAGGGCCTGATCTTTTAATTTGGC
1 -CAAATAAGGGCCCGATCTTTTAATTTGGC
42919 CAAATAAGGG
1 CAAATAAGGG
42929 TCTAACGTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
28 4 0.07
29 25 0.45
30 8 0.15
31 15 0.27
32 3 0.05
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (29 bp):
CAAATAAGGGCCCGATCTTTTAATTTGGC
Found at i:42886 original size:60 final size:59
Alignment explanation
Indices: 42801--42959 Score: 239
Period size: 60 Copynumber: 2.6 Consensus size: 59
42791 AAAAAGTATT
* *
42801 AATAAGGGACTAATGTTTGCCAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGCCA
1 AATAAGGGCCTAACGTTTG-CAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGCCA
*
42861 AATAAGGGCCTAACGTTATTG-AAAATGCTCAAATAAGGGCCTGATCTTTTAATTTGGCCA
1 AATAAGGGCCTAACG-T-TTGCAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGCCA
*
42921 AATAAGGGTCTAACGTTTGCCAAAATGCTCAAATAAGGG
1 AATAAGGGCCTAACGTTTG-CAAAATGCTCAAATAAGGG
42960 TTTGGCATCA
Statistics
Matches: 91, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
58 3 0.03
59 1 0.01
60 83 0.91
61 1 0.01
62 3 0.03
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (59 bp):
AATAAGGGCCTAACGTTTGCAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGCCA
Found at i:42897 original size:31 final size:30
Alignment explanation
Indices: 42859--42959 Score: 93
Period size: 31 Copynumber: 3.3 Consensus size: 30
42849 TTAATTTGGC
42859 CAAATAAGGGCCTAACGTTATTGAAAATGCT
1 CAAATAAGGGCCTAACGTT-TTGAAAATGCT
* **
42890 CAAATAAGGGCCTGATC-TTTT-AATTTGGC-
1 CAAATAAGGGCCT-AACGTTTTGAAAAT-GCT
*
42919 CAAATAAGGGTCTAACG-TTTGCCAAAATGCT
1 CAAATAAGGGCCTAACGTTTTG--AAAATGCT
42950 CAAATAAGGG
1 CAAATAAGGG
42960 TTTGGCATCA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
28 5 0.09
29 15 0.27
30 6 0.11
31 28 0.50
32 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (30 bp):
CAAATAAGGGCCTAACGTTTTGAAAATGCT
Found at i:43074 original size:29 final size:28
Alignment explanation
Indices: 43036--43134 Score: 76
Period size: 29 Copynumber: 3.4 Consensus size: 28
43026 AAACGTTAGA
43036 CCCTTATTTGGCCAAATTAAAAGACCGGG
1 CCCTTATTTGGCCAAATTAAAAGA-CGGG
** **
43065 CCCTTATTTGAG-CATTTTGGCAA-ACGTTAGG
1 CCCTTATTTG-GCCAAATT-AAAAGACG---GG
43096 CCCTTATTTGGCCAAATTAAAAGATCGGG
1 CCCTTATTTGGCCAAATTAAAAGA-CGGG
*
43125 CCTTTATTTG
1 CCCTTATTTG
43135 AACATTTTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
28 2 0.04
29 26 0.49
30 6 0.11
31 17 0.32
32 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (28 bp):
CCCTTATTTGGCCAAATTAAAAGACGGG
Found at i:43100 original size:60 final size:60
Alignment explanation
Indices: 43002--43165 Score: 265
Period size: 60 Copynumber: 2.7 Consensus size: 60
42992 TTCGATGGCA
*
43002 GGCCCTTATTTGAGCATTTTTGGCAAACGTTAGACCCTTATTTGGCCAAATTAAAAGACCG
1 GGCCCTTATTTGAGCA-TTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGACCG
*
43063 GGCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCG
1 GGCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGACCG
* * * *
43123 GGCCTTTATTTGAACATTTTGCCAAATGTTAGGCCCTTATTTG
1 GGCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTG
43166 AGCAATTAGA
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
60 81 0.84
61 16 0.16
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (60 bp):
GGCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGACCG
Found at i:44795 original size:2 final size:2
Alignment explanation
Indices: 44788--44820 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
44778 CTATTAACTA
44788 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44821 TTACCCTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.