Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015156.1 Corchorus olitorius cultivar O-4 contig15189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26912

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2422--2506
42
2.0
42
97
0
161
38
18
8
34
1.81
2706--2750
22
2.0
23
91
4
74
33
0
0
66
0.92
2830--3269
166
2.8
158
86
8
626
35
10
3
51
1.52
4001--4062
30
2.1
30
100
0
124
19
6
16
58
1.59
4124--4198
38
2.0
38
89
0
114
18
16
26
38
1.91
8552--8577
2
13.0
2
100
0
52
0
50
0
50
1.00
14373--14409
2
18.5
2
100
0
74
48
0
0
51
1.00
16920--16953
17
2.0
17
100
0
68
29
23
23
23
1.99
16943--17124
91
2.0
91
97
0
346
35
18
19
26
1.94
17837--17866
15
1.9
16
93
6
53
43
0
3
53
1.17
17826--17906
36
2.3
35
79
12
85
40
2
1
55
1.21
18651--18675
2
12.5
2
100
0
50
48
0
0
52
1.00
20748--20777
15
2.0
15
93
0
51
33
23
13
30
1.93
20826--20917
15
5.9
15
86
7
112
26
30
6
36
1.82
20826--20917
48
2.0
45
85
6
121
26
30
6
36
1.82
21170--21227
18
3.3
18
80
9
84
29
31
8
31
1.87

Tables:   1

The End!