Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015157.1 Corchorus olitorius cultivar O-4 contig15190, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18271

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2305--2330
2
13.0
2
100
0
52
50
0
0
50
1.00
6347--6449
51
2.0
51
83
3
127
41
13
24
20
1.88
11709--11743
2
17.5
2
100
0
70
51
0
0
48
1.00
15567--15754
22
8.5
22
70
9
82
30
17
11
40
1.84
16195--16234
20
1.9
20
85
10
53
37
10
12
40
1.77
16206--16293
20
4.2
20
70
11
68
42
7
12
37
1.72
16389--16936
22
25.3
21
67
16
126
38
10
15
35
1.81
16410--16936
44
11.7
44
69
12
185
38
10
14
36
1.81
16409--16553
66
2.2
65
79
10
161
40
8
13
37
1.77
16574--16653
23
3.5
22
81
1
79
36
11
13
38
1.81
17370--17433
21
3.2
19
70
23
58
34
9
12
43
1.75
18223--18268
2
23.0
2
100
0
92
50
0
0
50
1.00

Tables:   1

The End!