Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015160.1 Corchorus olitorius cultivar O-4 contig15193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137324

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
169--242
30
2.6
29
78
16
91
40
5
22
31
1.77
2910--2939
6
4.8
6
95
4
51
50
0
13
36
1.42
7277--7747
48
10.0
47
68
11
166
19
18
25
36
1.94
7576--7729
47
3.3
46
81
8
172
18
19
27
34
1.95
7969--8071
47
2.2
47
80
1
116
23
16
29
31
1.96
12066--12184
40
3.0
40
88
6
177
39
10
17
31
1.85
12066--12185
41
3.0
41
90
4
181
40
10
17
31
1.84
13136--13170
5
7.0
5
86
0
52
2
40
0
57
1.14
16087--16191
38
2.8
38
81
10
117
40
25
14
20
1.90
16746--16873
48
2.7
48
82
2
159
39
25
16
18
1.91
16962--17066
47
2.2
48
81
3
115
40
22
15
20
1.90
16980--17190
48
4.3
48
69
10
140
37
23
18
20
1.94
22367--22393
7
3.9
7
100
0
54
44
25
0
29
1.54
35430--35457
12
2.3
12
100
0
56
39
0
14
46
1.44
35464--35531
35
2.0
34
88
8
102
38
0
13
48
1.42
36338--36365
13
2.2
13
100
0
56
25
21
0
53
1.46
39857--39926
32
2.0
37
84
13
96
51
14
10
24
1.72
52239--52267
6
4.8
6
100
0
58
31
34
17
17
1.93
73031--73088
27
2.1
27
83
0
71
39
8
10
41
1.70
84485--84524
20
2.0
20
95
0
71
27
5
17
50
1.67
87319--87408
45
2.0
45
97
0
171
24
14
11
50
1.75
94812--94872
21
2.9
21
95
0
104
6
34
16
42
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95961--96107
76
1.9
77
94
1
260
26
10
36
25
1.89
96546--96910
185
2.0
185
92
0
604
30
20
9
39
1.84
96873--96922
25
2.0
25
92
0
82
48
10
10
32
1.70
102109--102145
19
1.9
19
88
0
56
72
16
8
2
1.19
109135--109181
14
3.3
14
82
5
67
74
6
2
17
1.12
109135--109180
15
3.1
15
84
3
67
76
6
2
15
1.09
121039--121167
39
3.3
39
91
0
204
36
10
35
17
1.84
131830--131889
16
3.6
16
70
20
52
43
18
6
31
1.76
131863--131969
45
2.6
40
79
15
135
46
13
9
30
1.74
132021--132067
24
2.0
24
100
0
94
46
6
29
17
1.72
134666--134710
20
2.2
20
81
11
56
73
8
6
11
1.25
134668--134710
21
2.1
20
86
4
59
74
9
6
9
1.22

Tables:   1

The End!