Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015162.1 Corchorus olitorius cultivar O-4 contig15195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66195

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
527--556
2
15.0
2
100
0
60
50
0
0
50
1.00
779--819
20
2.0
21
85
4
57
31
19
24
24
1.98
9045--9070
13
2.0
13
100
0
52
30
7
30
30
1.85
10413--10450
18
2.1
18
90
9
60
47
0
2
50
1.15
22914--23005
36
2.6
36
87
3
132
29
19
30
20
1.97
25260--25295
16
2.2
16
100
0
72
16
5
27
50
1.68
25307--25398
4
23.5
4
86
4
125
52
25
0
22
1.48
25477--25520
22
2.0
22
82
8
54
43
13
2
40
1.57
25528--25573
22
2.1
22
87
0
65
41
17
2
39
1.62
25593--25641
22
2.2
22
85
7
64
28
14
4
53
1.59
25623--26069
22
20.6
22
73
12
291
35
16
10
37
1.84
25803--26010
105
2.0
104
83
2
265
35
16
9
38
1.81
25825--25986
82
2.0
83
85
1
218
33
16
9
39
1.82
26177--26591
22
18.6
22
69
13
197
34
16
9
39
1.81
26441--26548
45
2.4
44
81
6
128
37
17
10
34
1.84
26596--26807
22
9.5
22
75
10
162
37
17
8
36
1.80
26631--26740
47
2.4
43
82
7
112
36
18
8
37
1.80
27270--27308
13
2.9
13
82
17
53
46
0
0
53
1.00
27276--27308
15
2.4
14
90
10
50
48
0
0
51
1.00
30866--30913
24
2.0
24
83
4
60
43
6
12
37
1.68
45133--45187
28
2.0
27
86
10
76
12
10
27
49
1.74
50241--50373
66
2.0
66
98
0
257
36
20
21
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53606--53639
2
17.0
2
100
0
68
0
50
0
50
1.00
54370--54404
6
6.0
6
86
6
54
37
0
14
48
1.44
55653--55700
23
2.1
23
96
0
87
39
16
4
39
1.68
57574--57731
60
2.6
61
81
5
187
37
12
18
31
1.88
57804--57919
29
3.9
30
74
14
123
34
19
16
29
1.94
63116--63182
34
2.0
34
85
5
91
43
11
5
38
1.66
64154--64192
2
19.5
2
100
0
78
48
0
0
51
1.00

Tables:   1

The End!