Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015163.1 Corchorus olitorius cultivar O-4 contig15196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  186809

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3339--3378
20
2.0
21
90
5
64
37
17
27
17
1.92
4947--4978
6
5.3
6
100
0
64
15
68
15
0
1.21
4972--5008
9
4.1
9
92
0
65
24
56
18
0
1.41
4974--5011
18
2.1
18
100
0
76
26
57
15
0
1.38
6746--6773
2
14.0
2
100
0
56
50
0
0
50
1.00
8503--8532
15
1.9
16
93
6
53
6
23
0
70
1.11
11188--11247
31
1.9
31
100
0
120
16
20
10
53
1.71
19324--19348
13
1.9
13
100
0
50
56
0
4
40
1.18
20471--20623
74
2.1
74
97
0
288
41
27
6
24
1.80
20559--20680
61
2.0
61
96
0
226
40
29
4
25
1.76
21544--21610
17
3.8
17
90
6
89
1
16
17
64
1.37
25943--26047
53
2.0
53
92
0
174
33
36
17
13
1.88
40212--40336
6
20.8
6
75
0
70
25
20
41
12
1.87
40183--40289
30
3.6
30
80
0
124
27
20
42
10
1.84
40212--40306
30
2.9
32
75
12
104
25
21
42
11
1.86
40213--40331
36
3.5
35
76
8
113
26
21
42
10
1.85
45658--45683
1
26.0
1
100
0
52
0
0
0
100
0.00
56019--56069
17
3.1
16
83
8
57
35
19
21
23
1.96
57875--57905
16
1.9
16
93
0
53
51
16
16
16
1.77
61552--61601
25
2.0
25
100
0
100
20
24
28
28
1.99
66195--66332
74
1.9
73
86
1
195
39
17
11
31
1.85
67828--67869
2
21.0
2
81
18
52
47
2
2
47
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68097--68138
11
3.8
11
80
0
57
42
2
0
54
1.13
68352--68419
30
2.3
30
87
7
95
36
20
14
27
1.92
68488--68527
21
2.0
20
85
5
53
55
0
10
35
1.34
70282--70320
14
2.9
13
80
3
51
53
2
2
41
1.28
70306--70563
125
2.0
127
91
6
414
48
1
10
38
1.49
81727--81759
15
2.2
15
94
0
57
42
21
24
12
1.86
84714--84779
33
1.9
35
87
6
100
53
9
21
16
1.71
89448--89575
29
4.4
29
98
0
247
38
15
13
32
1.86
95623--95658
3
12.0
3
93
0
63
0
36
0
63
0.94
101682--101706
4
6.2
4
100
0
50
48
0
0
52
1.00
104231--104275
2
23.5
2
91
8
76
53
0
46
0
1.00
104230--104275
11
4.1
11
97
2
83
54
0
45
0
0.99
112199--112240
21
2.0
21
95
0
75
59
0
0
40
0.97
157360--157436
35
2.1
36
95
4
138
18
11
10
59
1.59
163876--163918
22
2.0
22
100
0
86
58
18
4
18
1.56
166403--166470
30
2.3
29
82
9
84
14
26
17
41
1.88
166579--166656
30
2.6
30
91
2
122
38
15
29
16
1.90
170666--170692
1
27.0
1
100
0
54
0
0
0
100
0.00
173918--173945
6
4.7
6
100
0
56
50
14
0
35
1.43
179901--180227
76
4.3
76
92
0
521
20
18
28
32
1.96

Tables:   1

The End!