Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015164.1 Corchorus olitorius cultivar O-4 contig15197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5305
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27


Found at i:2376 original size:14 final size:14

Alignment explanation


    Indices: 2357--2383  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       2347 AAATTATTAT

                          
       2357 TTATTTTTTTTTTC
          1 TTATTTTTTTTTTC

                         
       2371 TTATTTTTTTTTT
          1 TTATTTTTTTTTT

       2384 AGAGAAAAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.07, C:0.04, G:0.00, T:0.89


Consensus pattern (14 bp):   
TTATTTTTTTTTTC

Found at i:2636 original size:23 final size:25

Alignment explanation


    Indices: 2610--2656  Score: 62
    Period size: 23  Copynumber: 2.0  Consensus size: 25

       2600 AATGCATTAG

                           *         
       2610 ACAAGAATAA-AAT-TAATAAAAAC
          1 ACAAGAATAATAATAAAATAAAAAC

                  *                 
       2633 ACAAGATTAATAATAAAATAAAAA
          1 ACAAGAATAATAATAAAATAAAAA

       2657 GTTTGAAAAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  23    9  0.45
  24    3  0.15
  25    8  0.40

ACGTcount: A:0.70, C:0.06, G:0.04, T:0.19


Consensus pattern (25 bp):   
ACAAGAATAATAATAAAATAAAAAC
Done.