Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015170.1 Corchorus olitorius cultivar O-4 contig15203, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35948

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
993--1122
49
2.7
49
80
8
156
26
16
4
52
1.63
1546--1705
84
1.9
84
94
0
284
47
9
16
26
1.77
2295--2357
21
3.2
20
82
11
76
30
20
14
34
1.92
9610--9651
14
3.2
14
74
19
54
42
16
9
30
1.80
15381--15420
20
2.0
21
90
5
64
37
17
27
17
1.92
19898--19933
2
18.5
2
94
5
65
50
0
0
50
1.00
21583--21622
17
2.2
19
86
8
57
60
2
5
32
1.32
21595--21634
19
2.1
19
86
9
55
55
2
2
40
1.27
21558--21827
140
2.0
133
79
9
289
51
3
8
35
1.51
21836--21896
24
2.6
24
72
12
63
44
1
14
39
1.55
22390--22426
17
2.3
16
90
9
58
48
0
0
51
1.00
22485--22516
16
2.0
16
93
0
55
46
0
0
53
1.00
22485--22531
19
2.5
18
86
6
58
51
0
0
48
1.00
22562--22630
35
2.0
35
91
0
111
43
14
15
26
1.85
23582--23616
18
1.9
18
100
0
70
40
14
5
40
1.69
24602--24677
22
3.6
21
80
5
82
40
13
6
39
1.70
24606--24677
21
3.4
21
82
5
83
38
13
6
40
1.72
24685--24767
23
3.8
22
78
9
80
36
18
7
38
1.78
25827--25861
3
11.7
3
93
0
52
60
0
0
40
0.97
31738--31776
18
2.1
19
90
4
62
15
7
15
61
1.55
32773--32801
2
15.0
2
92
7
51
51
0
0
48
1.00
35366--35397
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!