Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015171.1 Corchorus olitorius cultivar O-4 contig15204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53236

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6333--6361
13
2.2
13
100
0
58
13
0
0
86
0.58
8000--8036
19
1.9
19
88
0
56
37
13
16
32
1.87
9177--9222
15
2.9
15
87
6
56
56
0
0
43
0.99
16628--16723
31
3.2
29
69
16
70
37
17
16
28
1.92
16628--16787
60
2.7
59
80
5
187
35
18
18
28
1.94
16830--16945
60
1.9
60
85
0
160
29
17
11
42
1.84
18700--18739
9
4.4
9
83
0
53
47
2
45
5
1.38
18700--18739
18
2.2
18
90
0
62
47
2
45
5
1.38
37166--37542
203
1.9
202
90
2
605
34
17
18
29
1.94
42473--42534
30
2.1
30
90
0
97
46
6
22
24
1.75
45254--45281
14
2.0
14
100
0
56
28
7
21
42
1.79
46626--46665
14
2.7
15
84
11
55
35
10
0
55
1.34
46973--47273
22
13.8
22
74
7
193
34
9
17
37
1.84
47066--47928
44
19.8
44
67
17
220
36
7
18
37
1.80
47418--48057
22
29.5
22
67
14
160
36
8
17
38
1.79
47403--47519
61
1.9
60
84
5
155
33
5
20
40
1.77
47506--47555
21
2.3
22
89
3
75
48
6
8
38
1.57
47697--47734
19
2.0
19
85
10
51
44
2
18
34
1.64
47637--47924
63
4.5
61
75
17
196
36
7
18
37
1.78
47637--47855
41
5.2
40
76
18
175
37
7
17
37
1.78
47741--47929
82
2.2
88
78
16
202
37
8
17
37
1.80
47640--47927
149
1.9
147
81
12
338
36
7
18
37
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48147--48213
22
3.1
21
80
16
75
44
4
10
40
1.59
50028--50090
32
2.0
32
84
6
83
42
17
9
30
1.81

Tables:   1

The End!