Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015172.1 Corchorus olitorius cultivar O-4 contig15205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44167

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1544--1930
166
2.3
165
84
3
501
26
27
20
25
1.99
1987--2229
131
1.9
131
91
1
398
34
15
19
31
1.93
4883--4923
17
2.4
18
80
12
50
63
2
2
31
1.20
11578--11616
18
2.2
18
86
9
53
7
12
12
66
1.43
11788--11812
2
12.5
2
100
0
50
0
52
0
48
1.00
13894--13932
2
20.0
2
94
5
71
51
0
0
48
1.00
17425--17455
14
2.2
14
100
0
62
61
16
6
16
1.54
22962--22988
14
1.9
14
100
0
54
29
14
22
33
1.94
29580--29619
7
6.0
7
83
16
50
30
15
30
25
1.95
35436--35541
9
11.2
10
68
17
50
38
0
1
59
1.08
35418--35547
44
3.0
44
92
6
230
38
0
2
59
1.10
35418--35584
85
2.0
86
85
3
230
38
0
3
56
1.21
35433--35574
44
3.3
45
80
11
120
40
0
4
54
1.25
42254--42302
26
1.9
26
84
12
66
55
2
0
42
1.11
43485--43543
28
2.1
28
96
0
109
37
23
6
32
1.81

Tables:   1

The End!