Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015173.1 Corchorus olitorius cultivar O-4 contig15206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40079

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1083--1155
36
2.0
36
100
0
146
58
16
5
19
1.56
2555--2653
31
3.3
31
88
8
159
22
25
20
32
1.98
5878--5924
22
2.2
22
88
3
69
55
8
17
19
1.67
9103--9191
43
2.1
43
93
2
153
21
19
16
42
1.89
9270--9367
31
3.2
30
88
8
146
32
19
25
22
1.97
9281--9369
29
3.0
29
90
6
151
32
21
24
21
1.98
9281--9368
31
2.9
31
94
3
153
31
21
25
21
1.98
9574--9611
11
3.5
11
89
10
51
39
0
2
57
1.12
9755--9837
25
3.6
22
78
16
71
55
0
3
40
1.17
11978--12066
44
2.0
44
100
0
178
17
11
11
59
1.60
16393--16421
3
9.7
3
100
0
58
34
0
0
65
0.93
16459--16501
3
14.7
3
90
9
63
67
0
0
32
0.91
16502--16528
3
9.0
3
100
0
54
33
0
0
66
0.92
21154--21298
72
2.0
72
98
0
281
30
15
17
36
1.91
24860--24891
8
4.0
8
100
0
64
50
0
50
0
1.00
25135--25162
1
28.0
1
100
0
56
0
0
0
100
0.00
28857--28956
50
2.0
50
96
0
182
46
11
21
22
1.82
32065--32142
40
2.0
40
89
5
122
28
12
14
44
1.81
36538--36605
21
3.2
21
78
2
73
13
20
47
19
1.82
36870--36912
21
2.0
21
81
9
50
4
20
55
18
1.60
36951--37006
28
2.0
28
100
0
112
10
21
46
21
1.81

Tables:   1

The End!