Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015174.1 Corchorus olitorius cultivar O-4 contig15207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28779

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3440--3469
14
2.1
14
93
0
51
73
3
3
20
1.12
4386--4432
16
2.8
17
76
17
53
10
2
17
70
1.26
8054--8127
38
1.9
38
100
0
148
43
5
8
43
1.57
8277--8310
16
2.1
16
88
0
50
41
35
14
8
1.77
9004--9050
22
2.1
22
88
7
69
63
2
10
23
1.37
8927--9113
93
2.0
93
92
0
311
52
1
11
34
1.48
19289--19327
3
13.0
3
100
0
78
66
0
0
33
0.92
19530--19584
16
3.4
16
92
0
92
38
38
14
9
1.78
19530--19600
32
2.2
32
82
5
90
36
39
16
7
1.76
19816--19850
2
17.5
2
100
0
70
51
0
0
48
1.00
20055--20126
31
2.3
31
75
17
78
26
4
8
61
1.43
20552--20590
11
3.5
11
83
13
53
25
53
17
2
1.56
20552--20602
17
3.1
17
82
2
59
27
49
19
3
1.66
20593--20712
16
7.6
16
73
11
104
38
39
15
6
1.74
20599--20712
32
3.6
32
85
3
142
38
39
15
6
1.73
20911--20987
30
2.6
30
100
0
154
45
15
7
31
1.75

Tables:   1

The End!