Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015175.1 Corchorus olitorius cultivar O-4 contig15208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66996

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15889--15914
13
2.0
13
100
0
52
53
15
0
30
1.42
22003--22871
174
5.0
175
86
2
1115
36
14
26
23
1.93
22838--23220
91
4.2
89
72
10
238
41
16
21
21
1.90
27783--27841
27
2.3
27
82
5
68
49
0
10
40
1.37
28288--28312
12
2.1
12
100
0
50
48
16
0
36
1.46
28297--28432
67
2.0
67
100
0
272
35
30
2
31
1.73
28463--28488
12
2.2
12
100
0
52
42
7
15
34
1.75
31102--31155
3
18.0
3
100
0
108
66
0
0
33
0.92
41646--41692
17
2.9
16
78
12
51
42
2
0
55
1.12
43738--43774
13
2.8
13
87
0
56
16
43
8
32
1.77
43768--43854
41
2.1
41
89
0
129
41
21
10
26
1.85
45572--46755
331
3.6
327
80
4
1214
32
14
16
36
1.89
49803--49994
95
2.0
96
91
4
314
25
13
18
42
1.86
58148--58246
33
2.9
34
80
11
105
12
37
37
13
1.81
63681--63719
3
12.3
3
89
10
60
33
0
0
66
0.92
65232--65278
16
2.8
16
79
20
51
61
0
0
38
0.96
66105--66218
31
3.7
31
80
6
126
20
24
14
40
1.90

Tables:   1

The End!