Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015176.1 Corchorus olitorius cultivar O-4 contig15209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49587

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
745--821
27
2.7
29
78
10
86
40
10
15
33
1.81
2606--2645
21
1.9
21
85
10
55
25
42
2
30
1.68
16070--16108
2
19.5
2
100
0
78
51
0
0
48
1.00
17842--17866
2
12.5
2
100
0
50
48
0
0
52
1.00
23350--23379
7
4.3
7
95
0
51
13
30
16
40
1.87
27257--27323
21
3.2
21
64
16
57
52
13
5
28
1.64
27244--27323
42
1.9
42
97
0
151
48
13
7
30
1.70
27390--27503
57
2.0
57
91
3
187
41
3
22
32
1.71
27678--27715
13
3.0
13
92
3
60
60
0
0
39
0.97
27680--27718
11
3.8
11
87
12
57
56
0
0
43
0.99
33196--33256
6
10.2
6
83
0
68
22
29
26
21
1.99
33196--33253
12
4.8
12
84
0
80
24
29
25
20
1.99
33311--33355
23
2.0
22
95
4
81
22
31
26
20
1.98
33857--33882
13
2.0
13
100
0
52
61
0
7
30
1.24
35677--35720
11
4.0
11
82
8
54
20
11
18
50
1.77
35716--35765
25
2.0
24
84
11
64
42
0
0
58
0.98
39111--39149
19
2.1
19
100
0
78
33
20
20
25
1.97
40243--40277
12
2.9
12
86
0
52
25
22
25
25
2.00
41211--41519
25
12.4
25
85
4
363
29
27
22
20
1.98
41204--41519
50
6.3
50
87
2
404
28
27
21
21
1.99
41204--41519
100
3.2
100
90
1
465
28
27
21
21
1.99
46162--46190
2
14.5
2
100
0
58
0
0
48
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49543--49587
2
22.5
2
100
0
90
51
0
0
48
1.00

Tables:   1

The End!