Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015177.1 Corchorus olitorius cultivar O-4 contig15210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38369

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85--123
18
2.2
18
100
0
78
38
17
15
28
1.91
587--620
14
2.4
14
95
0
59
23
8
0
67
1.18
647--677
15
2.1
15
100
0
62
19
6
12
61
1.53
8465--8492
3
9.3
3
100
0
56
67
32
0
0
0.91
9915--9969
17
2.9
19
71
13
60
45
0
10
43
1.39
10562--10613
21
2.5
20
76
17
52
76
1
7
13
1.07
21637--21667
14
2.2
14
94
0
53
38
25
16
19
1.92
24845--24901
25
2.4
24
85
5
71
29
5
3
61
1.35
25156--25189
17
2.0
17
94
0
59
44
5
0
50
1.26
26296--26377
24
3.3
23
70
11
56
36
4
2
56
1.34
30567--30624
14
4.1
14
74
12
57
53
6
0
39
1.28
31307--31413
51
2.0
52
91
7
171
40
14
11
34
1.81
34100--34134
13
2.7
13
100
0
70
17
31
14
37
1.89
34123--34202
41
1.9
42
87
10
119
30
33
20
16
1.94
37135--37164
12
2.5
12
94
0
51
13
20
13
53
1.72

Tables:   1

The End!