Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015179.1 Corchorus olitorius cultivar O-4 contig15212, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9955
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32


Found at i:7176 original size:50 final size:51

Alignment explanation


    Indices: 7083--7185  Score: 138
    Period size: 50  Copynumber: 2.0  Consensus size: 51

       7073 CCCTCTTCAT

                                          * *            *     
       7083 ACTTTTGATTTTCTTAGCCCAAATTATGGTTCTAAGTCCAAAGGATCCAAA
          1 ACTTTTGATTTTCTTAGCCCAAATTATGGTCCCAAGTCCAAAGGACCCAAA

                                  *                      *      
       7134 ACTTTTGATTTT-TTAGCCCAAGTTATGGTCCCAAG-CCTAAAGGGCCCAAA
          1 ACTTTTGATTTTCTTAGCCCAAATTATGGTCCCAAGTCC-AAAGGACCCAAA

              
       7184 AC
          1 AC

       7186 GAAAGGTTCT


Statistics
Matches: 46,  Mismatches: 5, Indels: 3
        0.85            0.09        0.06

Matches are distributed among these distances:
  49    2  0.04
  50   32  0.70
  51   12  0.26

ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32


Consensus pattern (51 bp):   
ACTTTTGATTTTCTTAGCCCAAATTATGGTCCCAAGTCCAAAGGACCCAAA
Done.