Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015180.1 Corchorus olitorius cultivar O-4 contig15213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46667

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4541--4707
33
5.1
33
98
0
325
54
11
33
0
1.37
4541--4732
99
1.9
99
90
2
305
57
10
32
0
1.33
23853--23894
15
2.8
15
96
0
75
28
38
19
14
1.90
25540--25618
33
2.5
32
91
4
133
49
22
3
24
1.66
27062--27151
45
2.0
45
100
0
180
26
17
4
51
1.65
27191--27216
12
2.2
12
100
0
52
34
15
15
34
1.89
28616--28646
12
2.6
12
89
0
53
6
41
3
48
1.45
30857--30930
37
2.0
37
100
0
148
43
5
32
18
1.73
32244--32316
37
2.0
37
94
0
128
45
8
27
19
1.78
33715--33794
38
2.1
39
95
2
144
46
5
30
18
1.70
34238--34314
37
2.1
37
100
0
154
15
23
18
42
1.88
35227--35305
38
2.1
38
95
0
140
48
5
27
18
1.69
36696--36770
36
2.1
36
97
0
141
42
5
32
20
1.74
38543--38575
13
2.5
13
100
0
66
39
0
6
54
1.25
39036--39102
6
11.2
6
84
6
82
20
29
29
19
1.97
40833--40936
41
2.5
41
90
3
156
25
8
20
45
1.79
41580--41660
28
2.8
30
81
14
114
27
18
22
32
1.97
42106--42138
17
1.9
17
100
0
66
66
12
0
21
1.23
42958--43129
85
2.0
85
97
0
326
40
19
11
29
1.85
43264--43443
96
1.9
89
89
7
270
42
17
13
26
1.86
43594--43637
22
2.0
22
95
0
79
20
31
15
31
1.94
43845--43869
11
2.3
11
100
0
50
16
28
16
40
1.89

Tables:   1

The End!