Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015189.1 Corchorus olitorius cultivar O-4 contig15222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52365

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5357--5427
35
2.0
35
100
0
142
40
28
11
19
1.86
8124--8148
13
1.9
13
100
0
50
48
12
32
8
1.69
10924--10998
30
2.5
30
95
4
134
17
25
24
33
1.96
11492--11568
29
2.7
29
91
4
120
38
16
25
18
1.92
15429--15502
36
2.1
36
100
0
148
41
25
10
21
1.85
18200--18464
48
5.5
48
97
0
485
34
18
22
23
1.96
20931--20986
4
14.0
4
100
0
112
0
75
0
25
0.81
21591--21644
28
1.9
28
85
7
74
20
14
12
51
1.75
22821--24079
325
3.9
323
75
10
933
33
13
15
37
1.87
24614--24650
19
1.9
19
94
0
65
37
13
18
29
1.90
25811--25836
12
2.2
12
100
0
52
15
26
23
34
1.94
26633--26951
40
7.9
40
92
2
480
29
28
6
35
1.82
28615--28765
45
3.3
45
94
1
266
31
18
25
24
1.98
30477--30503
14
1.9
14
100
0
54
37
22
14
25
1.93
32093--32167
34
2.2
34
92
2
125
45
24
12
18
1.83
33155--33251
51
1.9
51
87
4
142
29
23
15
30
1.95
40960--41033
36
2.1
36
100
0
148
24
17
16
41
1.89

Tables:   1

The End!