Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015190.1 Corchorus olitorius cultivar O-4 contig15223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54040

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
504--598
24
4.0
24
92
0
154
25
38
24
11
1.89
1345--1382
19
2.0
19
94
0
67
28
10
34
26
1.90
1433--1701
29
9.2
29
83
12
356
27
17
32
21
1.96
1396--1658
88
3.0
88
88
10
364
28
17
32
21
1.96
1746--1782
19
1.9
19
100
0
74
43
21
10
24
1.84
3304--3493
36
5.6
36
62
17
84
29
45
11
13
1.78
3337--3443
30
3.3
30
67
22
81
28
46
9
14
1.76
3336--3443
33
3.2
33
69
10
101
28
47
9
14
1.75
3312--3535
69
3.3
66
81
13
262
30
45
11
12
1.78
3307--3506
63
3.1
62
81
9
213
28
46
11
14
1.79
3496--3698
69
2.9
69
91
2
298
33
43
9
12
1.76
7229--7281
15
3.5
15
86
0
70
16
69
5
7
1.31
7855--7924
12
5.8
12
83
3
88
37
34
1
27
1.66
8038--8088
24
2.1
24
85
7
68
7
27
17
47
1.75
9000--9040
15
2.8
15
85
3
57
65
0
34
0
0.93
13684--13735
25
2.0
26
81
3
61
38
9
19
32
1.84
15837--15912
21
3.7
21
85
3
111
28
26
11
32
1.92
22868--22894
14
1.9
14
100
0
54
18
7
14
59
1.58
28186--28228
2
21.5
2
95
0
77
48
2
0
48
1.14
34135--34177
17
2.5
17
80
0
50
79
2
13
4
1.00
51606--51689
29
2.8
28
83
8
96
21
20
11
46
1.82
52154--52203
26
2.0
26
88
11
77
58
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52308--52368
29
2.1
30
84
3
79
42
4
3
49
1.40
52780--54032
321
3.8
318
79
9
1065
33
13
16
36
1.87
52792--54031
657
1.9
652
80
7
1471
33
13
15
37
1.87

Tables:   1

The End!