Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015193.1 Corchorus olitorius cultivar O-4 contig15226, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50863

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51--90
16
2.5
16
84
11
55
35
5
0
60
1.19
43--98
16
3.5
17
68
24
50
46
3
0
50
1.19
53--97
14
2.9
15
83
16
56
42
4
0
53
1.21
1453--1489
17
2.2
17
95
0
65
16
24
13
45
1.83
2321--2395
21
3.3
21
66
16
60
21
14
13
50
1.77
2903--2982
32
2.5
32
83
2
99
16
18
26
38
1.92
3535--3578
21
2.0
22
87
12
65
36
22
15
25
1.94
3972--4083
32
3.5
32
88
0
152
25
26
26
20
1.99
5294--5333
20
2.0
20
100
0
80
35
5
30
30
1.79
5752--5868
62
1.9
61
80
1
135
36
9
8
45
1.67
18159--18195
19
1.9
19
100
0
74
27
27
13
32
1.94
33636--33884
84
3.0
84
93
0
426
32
29
21
16
1.95
37465--37519
3
18.3
3
81
7
58
36
1
29
32
1.68
42209--42251
20
2.2
20
82
0
50
60
11
2
25
1.43
44877--44903
11
2.5
11
100
0
54
59
29
0
11
1.32
46007--46061
28
2.0
27
86
10
76
12
10
27
49
1.74
49444--49526
30
3.0
27
84
10
121
42
3
3
50
1.37

Tables:   1

The End!