Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015197.1 Corchorus olitorius cultivar O-4 contig15230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60122

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
959--992
12
2.8
12
86
0
50
61
0
26
11
1.30
6769--6820
25
2.1
25
96
0
95
59
7
19
13
1.58
8026--8054
8
3.8
8
90
9
51
65
0
0
34
0.93
20360--20419
29
2.1
29
87
0
84
21
8
10
60
1.55
20950--21352
209
1.9
206
95
2
727
44
8
10
36
1.71
21475--21536
17
3.4
17
72
20
61
33
4
11
50
1.60
21478--21542
22
3.2
22
64
28
61
33
6
9
50
1.59
21461--21580
39
3.1
39
96
1
213
36
4
9
50
1.54
24899--25018
30
4.0
30
84
1
168
35
20
21
21
1.96
29759--29806
13
3.7
13
74
20
55
25
20
2
52
1.58
29759--29798
21
1.9
21
94
0
71
25
20
2
52
1.59
31046--31192
61
2.4
61
85
5
181
44
15
17
22
1.86
31213--31266
22
2.5
21
80
14
56
42
11
9
37
1.73
31219--31264
22
2.1
22
84
8
58
47
10
8
32
1.69
33239--33319
39
2.0
40
90
2
128
50
7
3
38
1.48
33310--33355
24
2.0
23
95
4
83
30
0
8
60
1.26
33426--33834
202
2.0
203
91
4
668
36
11
8
43
1.72
33952--33999
25
1.9
25
87
8
71
47
2
14
35
1.56
42303--42495
64
3.0
64
100
0
386
44
10
12
32
1.77
42914--42994
38
2.1
38
95
0
144
54
11
9
24
1.66
44015--44047
3
11.0
3
100
0
66
66
0
0
33
0.92
47324--50133
333
8.5
330
78
5
2666
36
15
14
33
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47361--50120
660
4.2
656
82
5
2758
36
15
14
33
1.88
50421--50450
15
1.9
16
93
6
53
53
3
0
43
1.17
50904--50930
8
3.4
8
100
0
54
48
0
25
25
1.52
54474--54507
17
2.0
17
100
0
68
52
0
17
29
1.45
55337--55433
21
4.6
21
79
18
105
38
1
6
54
1.32
55338--55433
41
2.3
43
87
8
137
38
1
6
54
1.33
55338--55444
41
2.6
41
84
7
103
40
1
7
50
1.41
55411--55453
19
2.2
19
83
4
50
39
2
11
46
1.53
56916--57008
45
2.1
45
100
0
186
21
23
44
10
1.84
60016--60072
6
9.5
6
86
9
73
78
0
21
0
0.74
60017--60061
5
8.2
5
88
11
54
80
0
20
0
0.72
60016--60072
23
2.4
24
94
5
98
78
0
21
0
0.74

Tables:   1

The End!