Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015200.1 Corchorus olitorius cultivar O-4 contig15233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90562

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
296--1515
332
3.7
324
75
11
1074
36
15
15
33
1.88
1770--1873
31
3.4
31
72
15
117
35
18
18
27
1.94
1774--1966
60
3.2
59
85
4
262
35
17
17
30
1.93
2008--2108
31
3.3
31
68
10
82
25
17
16
39
1.91
2008--2168
60
2.7
60
87
1
225
26
16
18
38
1.92
2304--2340
15
2.4
16
86
4
58
54
2
0
43
1.14
3487--3548
33
1.9
32
93
3
106
37
1
3
58
1.24
3459--3539
39
2.0
40
90
2
128
38
4
2
54
1.35
13486--13600
41
2.8
41
97
0
212
34
8
12
44
1.73
16478--16513
16
2.2
17
90
5
56
36
0
0
63
0.94
16477--16525
24
2.0
24
84
0
62
38
0
2
59
1.09
19779--19807
2
14.5
2
100
0
58
51
0
0
48
1.00
32882--33072
94
2.0
94
97
0
364
34
21
9
34
1.87
35472--35527
27
2.0
28
93
3
96
50
8
7
33
1.61
41227--41269
21
2.0
21
95
0
77
51
13
11
23
1.74
42385--42476
34
2.7
34
100
0
184
34
20
8
35
1.84
51240--51293
28
2.0
27
88
3
81
38
7
11
42
1.68
51675--51782
50
2.2
50
93
1
182
42
8
10
38
1.69
52355--52417
5
12.8
5
85
6
67
4
0
14
80
0.86
52390--52426
7
5.6
7
81
12
51
0
0
13
86
0.57
52354--52426
25
3.0
24
82
9
76
5
0
15
79
0.90
52385--52426
19
2.2
19
91
0
66
0
0
14
85
0.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52380--52418
12
3.2
12
88
0
60
0
0
12
87
0.55
68157--68213
27
2.1
27
83
3
71
21
10
5
63
1.46
68320--68349
15
1.9
16
93
6
53
43
0
3
53
1.17
68940--72060
661
4.7
654
78
10
2437
33
14
16
36
1.88
71133--72207
333
3.2
327
80
7
1070
33
13
16
36
1.88
71685--72718
522
2.0
517
82
7
1252
33
13
15
37
1.87
90384--90458
33
2.3
33
97
0
141
21
16
18
44
1.87

Tables:   1

The End!