Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015201.1 Corchorus olitorius cultivar O-4 contig15234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96149

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1920--2066
42
3.4
42
88
5
213
33
23
29
13
1.93
2395--2491
33
3.2
33
63
27
88
53
5
8
32
1.53
2386--2498
56
2.0
56
98
0
217
53
5
7
33
1.53
11381--11434
28
1.9
28
88
7
83
25
14
14
44
1.84
14475--14545
36
2.1
34
89
7
108
26
29
14
29
1.95
14539--14569
15
2.1
15
100
0
62
6
22
19
51
1.69
20745--20843
29
3.3
29
81
8
101
18
25
15
41
1.89
23372--23428
29
2.0
29
82
0
69
35
17
10
36
1.84
38443--38475
16
2.1
16
100
0
66
18
12
33
36
1.88
38488--38535
24
2.0
24
91
0
78
22
10
16
50
1.76
38504--38669
82
2.0
82
96
0
305
21
16
21
40
1.91
41893--41929
19
1.9
19
94
0
65
29
18
13
37
1.90
56910--56957
24
2.0
24
91
0
78
29
20
12
37
1.90
74910--75264
180
2.0
180
91
1
577
26
11
18
43
1.85

Tables:   1

The End!