Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015205.1 Corchorus olitorius cultivar O-4 contig15238, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39602

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
703--1236
254
2.1
254
93
1
919
36
18
19
26
1.94
12475--12654
75
2.4
75
89
0
270
18
33
14
33
1.91
13703--13734
3
10.3
3
93
6
55
37
0
0
62
0.95
24681--24705
13
1.9
13
100
0
50
56
0
0
44
0.99
26337--26366
13
2.3
13
100
0
60
30
0
13
56
1.37
29559--29643
42
2.0
42
86
4
118
35
8
21
35
1.83
29498--29697
112
1.8
108
81
6
249
36
8
20
35
1.82
29370--29961
22
26.5
22
65
14
169
36
10
16
36
1.82
32540--32569
14
2.1
14
100
0
60
26
13
36
23
1.92
34339--34419
21
3.8
21
75
14
67
50
8
16
24
1.72
34361--34546
22
8.5
22
78
12
154
40
9
13
36
1.78
34400--34546
65
2.2
65
79
10
156
37
8
13
40
1.76
34427--34546
43
2.8
44
82
7
147
36
10
13
40
1.78
35806--36039
22
10.5
22
72
11
122
36
8
17
37
1.80
35803--36039
66
3.5
68
83
9
274
35
8
18
37
1.81
35807--37013
44
27.4
44
67
18
295
39
9
15
35
1.81
36044--36412
22
16.7
21
69
16
153
39
10
16
33
1.83
36243--36617
22
16.8
23
65
16
103
40
9
13
36
1.78
36263--36412
67
2.3
67
80
6
164
40
10
13
35
1.79
36474--36845
22
17.2
21
71
13
186
39
9
15
35
1.80
36912--37015
22
4.9
21
71
10
68
48
10
8
32
1.68
36977--37016
20
2.0
20
95
0
71
45
7
10
37
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36983--37028
22
2.2
20
88
7
65
50
10
10
28
1.71
36851--37028
65
2.7
65
75
11
159
44
11
12
31
1.78

Tables:   1

The End!