Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015206.1 Corchorus olitorius cultivar O-4 contig15239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11941

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
335--377
21
2.0
21
86
0
59
41
9
32
16
1.80
5922--5946
12
2.1
12
100
0
50
0
0
8
92
0.40
5939--6513
220
2.6
222
89
4
856
19
24
11
44
1.83
9212--9742
22
24.3
22
71
12
233
35
16
9
38
1.82
9463--10050
44
13.8
44
69
15
269
35
16
9
39
1.80
9834--9985
66
2.3
66
81
2
180
34
13
11
40
1.81
9836--10050
22
9.7
23
72
11
121
34
14
11
40
1.81
9861--10167
22
13.8
22
67
18
70
35
15
9
38
1.81
10131--10191
22
2.8
22
82
0
59
37
22
6
32
1.80
10275--10489
22
9.7
21
72
11
135
37
17
10
34
1.85
10283--10491
66
3.1
65
79
8
206
37
18
10
33
1.84
10866--10893
13
2.2
13
100
0
56
46
0
14
39
1.44
11897--11925
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!