genome.fa.s15207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015207.1 Corchorus olitorius cultivar O-4 contig15240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103834

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445--474	2	15.0	2	100	0	60	50	0	0	50	1.00
8661--8712	21	2.6	20	82	14	63	53	3	15	26	1.59
10367--10434	16	4.7	15	71	18	54	50	16	0	33	1.45
10367--10434	15	4.7	15	75	12	61	50	16	0	33	1.45
10587--10627	19	2.2	19	86	4	57	29	2	2	65	1.18
10742--10768	13	2.1	13	100	0	54	40	0	14	44	1.46
12648--12712	32	2.0	32	100	0	130	30	3	24	41	1.70
13778--13827	25	2.0	25	96	0	91	46	4	18	32	1.67
17481--17521	21	1.9	22	85	5	57	43	29	17	9	1.80
18729--18783	6	9.3	6	92	4	94	50	0	16	32	1.45
20284--20330	21	2.2	21	92	0	67	31	4	36	27	1.76
25899--25952	22	2.3	23	84	12	67	46	5	24	24	1.74
26925--26963	20	2.0	20	85	10	53	33	35	0	30	1.58
27098--27334	87	2.7	86	81	7	282	34	25	8	31	1.87
29546--29592	23	2.0	23	100	0	94	38	34	4	23	1.74
35565--35625	29	2.0	32	87	9	92	45	24	13	16	1.83
40909--41022	55	2.1	55	96	0	210	33	19	20	27	1.96
48011--48509	22	22.5	22	70	13	119	35	11	18	35	1.87
48011--48135	44	2.8	44	86	0	160	41	13	12	32	1.82
48266--48482	44	4.9	44	71	10	140	31	11	18	38	1.86
48366--48509	66	2.2	65	77	3	146	32	12	16	38	1.86
49509--49553	3	15.0	3	100	0	90	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49642--49694	19	2.8	19	79	0	70	33	22	11	32	1.90
50341--50418	22	3.5	22	66	13	59	44	1	10	43	1.46
57250--57312	29	2.2	29	85	5	83	19	20	15	44	1.87
58759--63490	332	14.3	330	76	9	3586	36	15	14	33	1.88
60997--63490	331	7.5	328	75	9	1902	36	14	14	34	1.87
60997--63490	685	3.7	660	75	11	2148	36	14	14	34	1.87
76312--76359	3	16.3	3	95	4	89	68	0	0	31	0.90
77030--81710	332	14.2	329	79	6	4294	36	14	14	33	1.88
77030--81710	666	7.1	660	81	6	4459	36	14	14	33	1.88
81770--81799	15	1.9	16	93	6	53	53	3	0	43	1.17
81774--82313	272	2.0	268	96	1	992	48	6	6	38	1.54
82988--83036	21	2.3	22	83	16	59	38	2	2	57	1.22
82988--83033	20	2.2	22	85	14	62	36	2	2	58	1.22
85871--85956	40	2.2	40	97	0	163	27	13	12	45	1.81
89689--89851	22	7.5	21	74	10	132	36	17	10	36	1.84
89688--89849	87	1.9	88	82	8	206	37	17	10	35	1.84
89924--90088	22	7.5	22	69	13	92	36	12	10	40	1.79
90033--90108	22	3.5	22	87	0	107	36	11	11	39	1.79
92948--96075	332	9.5	330	77	7	2828	33	14	15	36	1.88
100438--100502	32	2.0	33	87	3	96	23	20	4	52	1.65
101578--101641	19	3.3	19	80	8	83	34	17	10	37	1.85
101789--101889	50	2.0	50	100	0	202	38	13	25	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102042--102075	15	2.2	16	89	5	52	38	2	0	58	1.13
102040--102077	18	2.1	18	90	9	60	39	2	0	57	1.12
102870--103827	333	2.9	328	83	5	1099	36	16	14	32	1.89

Tables:   1

The End!