Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015208.1 Corchorus olitorius cultivar O-4 contig15241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44903

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4323--4365
5
9.4
5
80
19
58
55
0
20
23
1.43
4323--4365
8
4.8
9
86
13
54
55
0
20
23
1.43
10478--10561
16
5.3
16
76
1
80
53
32
9
4
1.54
10895--11091
32
6.1
32
76
7
130
36
19
18
25
1.94
10948--11093
64
2.3
64
84
2
177
33
20
19
26
1.97
11168--11235
23
2.9
24
84
2
93
25
22
23
29
1.99
12724--12753
15
1.9
16
93
6
53
43
0
3
53
1.17
13084--16340
668
5.0
667
76
12
1831
32
14
15
37
1.88
15190--16424
332
3.7
324
79
7
1276
31
14
16
37
1.89
17354--18058
334
2.1
331
83
4
875
32
13
16
37
1.87
22371--23032
351
1.9
348
88
2
995
31
19
16
32
1.94
23542--23593
27
2.0
27
92
3
88
38
1
3
55
1.29
25150--25182
2
16.5
2
100
0
66
48
0
0
51
1.00
28762--28833
37
1.9
37
97
0
135
50
16
6
26
1.71
29079--29142
31
2.1
31
93
0
110
46
12
0
40
1.42
31328--31453
45
2.8
45
98
0
243
34
5
20
38
1.76
31685--31733
25
2.0
25
88
8
73
38
0
0
61
0.96
32079--32107
15
1.9
15
100
0
58
62
6
0
31
1.22
32538--32573
3
12.0
3
100
0
72
66
0
0
33
0.92
32739--32772
15
2.3
15
89
0
50
32
8
23
35
1.86
44080--44149
36
1.9
36
91
0
113
21
10
8
60
1.55

Tables:   1

The End!