genome.fa.s15209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015209.1 Corchorus olitorius cultivar O-4 contig15242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177355

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3214--3264	22	2.3	21	80	9	57	39	11	11	37	1.79
3507--3583	22	3.5	22	77	7	77	33	20	7	37	1.82
3499--3795	44	6.8	43	71	13	171	33	17	8	39	1.81
3604--3826	22	10.1	22	71	7	139	34	16	8	39	1.80
3604--3841	66	3.6	66	73	12	193	34	16	8	40	1.79
4073--4144	29	2.5	29	86	0	108	12	12	13	61	1.58
8822--8893	28	2.4	29	88	9	110	26	15	22	36	1.93
12410--12480	37	1.9	37	91	0	115	36	8	16	38	1.80
15625--15652	2	14.0	2	100	0	56	50	0	0	50	1.00
17606--17676	33	2.2	33	92	0	115	36	21	23	18	1.95
23958--24073	57	2.1	56	93	1	196	41	17	22	18	1.90
25060--25323	38	6.9	38	90	0	368	29	15	23	32	1.95
29412--29489	35	2.1	36	93	6	131	43	12	12	30	1.81
38869--38893	13	1.9	13	100	0	50	56	0	0	44	0.99
39103--39161	25	2.4	24	81	16	75	59	6	0	33	1.24
46369--46438	1	70.0	1	73	0	59	87	12	0	0	0.55
46369--46438	17	4.1	17	85	10	99	87	12	0	0	0.55
46370--46440	6	12.2	6	84	14	71	85	14	0	0	0.59
50036--50469	218	2.0	218	92	0	715	35	17	17	29	1.93
50689--50716	2	14.0	2	100	0	56	0	50	0	50	1.00
56843--56876	16	2.1	16	100	0	68	38	5	11	44	1.65
57587--57627	21	2.0	21	90	0	64	34	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63360--63394	2	17.5	2	100	0	70	51	0	0	48	1.00
63766--63794	15	1.9	15	100	0	58	24	62	6	6	1.45
68397--68460	29	2.2	30	91	2	103	23	21	14	40	1.90
69010--69041	10	3.2	10	95	0	55	43	21	34	0	1.53
72465--72504	21	2.1	19	86	13	55	40	15	25	20	1.90
78865--79604	147	5.0	147	79	4	704	32	20	20	27	1.97
78865--79583	294	2.4	293	80	5	801	31	20	19	27	1.97
83355--84241	147	6.0	146	80	3	904	32	19	19	28	1.96
83355--84241	294	3.0	291	81	2	1006	32	19	19	28	1.96
83418--84241	441	1.9	441	81	3	1021	31	20	19	28	1.97
93090--93129	21	1.9	21	84	0	53	35	20	10	35	1.86
106641--106666	13	2.0	13	100	0	52	46	7	15	30	1.74
132288--132359	31	2.3	32	85	7	94	40	20	19	19	1.92
136137--136183	21	2.2	22	92	3	78	14	12	19	53	1.73
151342--151417	38	2.0	38	100	0	152	50	15	18	15	1.79
153950--153976	4	6.8	4	100	0	54	77	0	0	22	0.76
161947--162011	33	2.0	33	93	0	112	12	32	33	21	1.90
162055--162129	10	7.5	10	71	21	59	57	0	0	42	0.98
162055--162123	29	2.4	28	85	7	95	56	0	0	43	0.99
162055--162130	16	5.1	15	79	16	86	57	0	0	42	0.98
162057--162123	13	4.7	14	80	14	75	56	0	0	43	0.99
164517--165668	332	3.5	328	82	6	1265	36	16	13	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165532--165801	133	2.0	133	93	1	461	38	14	11	35	1.82
165200--166133	465	2.0	464	92	2	1563	35	15	14	34	1.89
165665--166898	332	3.8	324	90	4	1871	34	15	15	33	1.90
166931--167201	133	2.0	133	92	1	454	39	14	10	36	1.80
167064--167984	332	2.8	333	91	1	1490	35	16	15	32	1.90
168791--168816	7	3.7	7	100	0	52	38	0	30	30	1.58
170075--170123	24	2.2	22	89	10	73	57	18	10	14	1.65
170193--170236	14	3.1	14	80	0	52	59	15	15	9	1.61
170201--170244	14	3.1	14	80	0	52	61	18	11	9	1.55
173003--173027	13	1.9	13	100	0	50	48	20	8	24	1.76
174550--174593	15	2.9	15	79	3	52	50	0	0	50	1.00
175760--176066	154	2.0	154	91	2	501	32	18	19	29	1.96
175914--177353	331	4.4	330	88	5	2116	34	16	16	32	1.91
175914--177353	650	2.2	649	89	4	2175	34	16	16	32	1.91

Tables:   1

The End!