Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015212.1 Corchorus olitorius cultivar O-4 contig15245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75526

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
687--2749
332
6.3
330
85
6
2520
34
15
15
34
1.89
686--2749
643
3.2
647
85
5
2491
34
15
15
34
1.89
3163--3192
15
1.9
16
93
6
53
53
3
0
43
1.17
12121--12149
2
14.5
2
100
0
58
51
0
48
0
1.00
15033--15087
24
2.2
24
78
12
58
10
9
3
76
1.13
20634--20659
8
3.2
8
100
0
52
11
34
0
53
1.37
34046--34151
56
1.9
56
88
0
158
25
11
19
43
1.84
43445--43477
2
16.5
2
100
0
66
51
0
0
48
1.00
44367--44458
45
2.0
45
100
0
184
27
26
17
29
1.97
49482--49520
6
6.8
6
91
8
64
0
12
0
87
0.55
49482--49520
11
3.5
11
89
6
60
0
12
0
87
0.55
56297--56426
27
4.6
27
75
11
125
20
25
27
26
1.99
56237--56395
60
2.7
60
93
0
273
19
23
28
28
1.98
56264--56368
33
3.4
33
69
15
96
18
22
29
29
1.97
61199--61240
21
2.0
21
95
0
75
59
7
19
14
1.57

Tables:   1

The End!