Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015213.1 Corchorus olitorius cultivar O-4 contig15246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71949
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:760 original size:25 final size:23
Alignment explanation
Indices: 720--789 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
710 TTAAATGCCA
720 TTACTT-AAACTATTATAATTTTAT
1 TTACTTAAAACTATTAT--TTTTAT
744 TCTACTTAAAACT-TTATTTTTAT
1 T-TACTTAAAACTATTATTTTTAT
* * *
767 TTAATTAAATCTAATATTTTTAT
1 TTACTTAAAACTATTATTTTTAT
790 AATTACTTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 9 0.22
23 16 0.40
24 1 0.03
25 9 0.22
26 5 0.12
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (23 bp):
TTACTTAAAACTATTATTTTTAT
Found at i:10311 original size:2 final size:2
Alignment explanation
Indices: 10304--10335 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10294 TTAGTAACAC
10304 TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10336 TTGATGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10324 original size:15 final size:15
Alignment explanation
Indices: 10304--10332 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10294 TTAGTAACAC
10304 TATATATATATATAA
1 TATATATATATATAA
10319 TATATATATATATA
1 TATATATATATATA
10333 TATTTGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATATATATATAA
Found at i:19046 original size:18 final size:18
Alignment explanation
Indices: 19023--19057 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
19013 AAAGCTAGCA
19023 ATTACCAATACAAGTACT
1 ATTACCAATACAAGTACT
*
19041 ATTACCAATCCAAGTAC
1 ATTACCAATACAAGTAC
19058 AAATTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.26, G:0.06, T:0.26
Consensus pattern (18 bp):
ATTACCAATACAAGTACT
Found at i:23505 original size:18 final size:18
Alignment explanation
Indices: 23474--23520 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
23464 TTTGATCAGT
* *
23474 ATTACCTTTTCGATCAAA
1 ATTACCTCTGCGATCAAA
* *
23492 GTTGCCTCTGCGATCAAA
1 ATTACCTCTGCGATCAAA
23510 ATTACCTCTGC
1 ATTACCTCTGC
23521 CAAAACCTCT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (18 bp):
ATTACCTCTGCGATCAAA
Found at i:25023 original size:30 final size:31
Alignment explanation
Indices: 24964--25023 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
24954 ATCGGCTTTA
24964 GGATCGTTTTCTGGATCACGTTGAGACTCAG
1 GGATCGTTTTCTGGATCACGTTGAGACTCAG
* * *
24995 GGATTGTTTTCTGGTTCATGTT-AGACTCA
1 GGATCGTTTTCTGGATCACGTTGAGACTCA
25024 TTAAACCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.18, C:0.17, G:0.27, T:0.38
Consensus pattern (31 bp):
GGATCGTTTTCTGGATCACGTTGAGACTCAG
Found at i:26860 original size:24 final size:24
Alignment explanation
Indices: 26808--26853 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
26798 CTCTTTCAGA
26808 TTCAGTAGATGAATTAGATTCCTG
1 TTCAGTAGATGAATTAGATTCCTG
26832 TTCAGTAGATGAATTAGATTCC
1 TTCAGTAGATGAATTAGATTCC
26854 CTGTCAGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (24 bp):
TTCAGTAGATGAATTAGATTCCTG
Found at i:27877 original size:5 final size:5
Alignment explanation
Indices: 27867--27902 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
27857 ATAGTCTACA
27867 TATCT TATCT TATCT TATCT TATCT TATCT TATCT T
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT T
27903 TTTTTTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (5 bp):
TATCT
Found at i:28224 original size:5 final size:5
Alignment explanation
Indices: 28214--28241 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
28204 GATGTTCCAG
28214 TTATC TTATC TTATC TTATC TTATC TTA
1 TTATC TTATC TTATC TTATC TTATC TTA
28242 CTCCTATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATC
Found at i:32064 original size:666 final size:656
Alignment explanation
Indices: 30677--32844 Score: 1834
Period size: 666 Copynumber: 3.3 Consensus size: 656
30667 TAAGAATTTG
* *
30677 TTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAA
1 TTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAG-AAAAATATGAAAAA
* * *
30742 TGATATT-GAAAGCGTGAAAATCCCTTCAATGTTTTTGGCGTTGAATTATATATTTTTTTAATGA
65 CGATATTAG-AAGCGTGAAAACCCCTTCAATATTTTTGGCGTTGAATTATATA-TTTTTT-ATGA
* * * *
30806 GTATTGTGGCTAAAAATTGAGAAAATATCTTTCGGATCAATTTTTGCAAAATTTTAACCGAAATC
127 GTATTGTGGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTT-AGCAAAATC
* * * *
30871 ATGTAACAATCATCACGGTTTTTTTTTTGGCTAAAAATGCGT-TCCAGAG-CCC-ATTTCAGTTT
191 GTGTAACAATCATCACAG-----TTTTTGGCT-AAAA-GCGTGTCCAGGGCCCCGA-GTCAGTTT
* * *
30933 TACATGAGTTTTGGTATCG--AGACTCCTTGAAATATCTATATTCATCTAACCAAA-TC--CC-A
248 TGCATGAGTTTTTG-A-CGCAAAACTCCTTGAAATATCTATATTCATCTAACCAAATTCAGCCAA
* * * *
30992 --GC------CA-TTGTTTTTACAAAGCATCTGAATCATGTTTCAATTTAATTAAAAATTAATTC
311 TTGCATTTAAGATTTGTTTTTAC-GAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAATTC
* ** * *
31048 AGAAAAAATAGGAAAAACGATATTAGAAGTGTGAAAAGCCCTTTAATCTTTTTGGCGTTGAATTA
375 A-AAAAAATATGAAAAACGATATTAGAAGCATGAAAAGCCC-TCAATATTTTTGGCGTTGAATTA
* * *
31113 TATATTTTTCTGTTAGTATTGTGGCTAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAA
438 TATATTTTTATGTTAGTATTGTAGCCAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAA
* * * **** * * * *
31178 ATATTAGCCGAAATCGTGTATCATCACAGTTTTTTTTTCCTTCTCTAAAAACGTGTTTCGGGGCC
503 ATATTAGCCGAAATCATGTACCAACACAGTACAGTTTT-CTTCACGAAAAACGCGTTTCAGGGCC
* *
31243 TCAGATCAGTTTTGCATGATTTTTAGCGCCAAGACTACTTGAAATATCTATATTCATCTAATCAA
567 CCAGATCAATTTTGCATGATTTTTAGCGCCAAGACTACTTGAAATATCTATATTCATCTAATCAA
*
31308 ATCTCAGCCACATTGGATTTAAGGA
632 ATCTCAGCCACATTGCATTTAAGGA
* * * *
31333 TTTGTTTTTACGACCATCTAAATCTTATTTC----TAATTAGAAATTAATTCGGAAAAAGTAGGA
1 ----TTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAA-TATGA
*
31394 AAAACGATATTAGAAGCGTAAAAACCCCTTCAATATTTTTGGCGTTGAATTATATATTTTTTATG
61 AAAACGATATTAGAAGCGTGAAAACCCCTTCAATATTTTTGGCGTTGAATTATATATTTTTTATG
* * * *
31459 AGTATTTTAGCCAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGTAAAATTTTAGTCAAAAT
126 AGTATTGTGGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAG-CAAAAT
* * *
31524 CGTGTAATAATCATCACAGTTTTTGGCTAAAAGCGTGATACAGGGCCCCGAGTCACTTTTGCATG
190 CGTGTAACAATCATCACAGTTTTTGGCTAAAAGCGTG-TCCAGGGCCCCGAGTCAGTTTTGCATG
* * *
31589 A-TTTTTGACGCAAAAACTCCTTGAGATATCCATATTCATCTAATCAAATCTCAGCCATATTGCA
254 AGTTTTTGACGC-AAAACTCCTTGAAATATCTATATTCATCTAACCAAAT-TCAGCCA-ATTGCA
*
31653 TTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTCGATTTAATTAGAAATTAATTCCAAA
316 TTTAA-GATTTGTTTTTACGAGCATCTGAATCATG-TTTCGATTTAATTAGAAATTAATT-CAAA
* * * * *
31718 AAAATATAAAAAACGATATGAAAAGCATGAAAAGTCCTCAAATATTTTTGGCGTTAAATTATATA
378 AAAATATGAAAAACGATATTAGAAGCATGAAAAGCCCTC-AATATTTTTGGCGTTGAATTATATA
* * * * *
31783 TATATATATATTTATGAGTATTTTAGCCAAAAATTGAGGAAAATTTTTTCGGGTC-GTTTTTGCA
442 T-T-T-T-TATGT-T-AGTATTGTAGCCAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCA
* * *
31847 AAATTTTATCCGAAATCATTTACCAAC-CA-TCACAGTTTT-TT-ACGAAAAACGCGTTTCAGGG
501 AAATATTAGCCGAAATCATGTACCAACACAGT-ACAGTTTTCTTCACGAAAAACGCGTTTCAGGG
* * * * * * *
31908 CCCCAGTTCAATTTTGCATGATTTTTTG-GTATCGAGACTCCTTGAAATATCTGTATTTATCTAA
565 CCCCAGATCAATTTTGCATGATTTTTAGCG--CCAAGACTACTTGAAATATCTATATTCATCTAA
31972 TCAAATCTCAGCCACATTGCATTTAAGGA
628 TCAAATCTCAGCCACATTGCATTTAAGGA
* * *
32001 -TTTTACGAGCATATGAATCATATTTCGATTTGATTAGAAATTAATTCAGAAAAATATGAAAAAC
1 TTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAAC
* * * ** * * * * *
32065 CATATTAAAAGGGTGAAAAGTCCTCCAATATTTTTGGAGTTGAATTATATATATTTTATAATTAT
66 GATATTAGAAGCGTGAAAACCCCTTCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGTAT
* * *
32130 TGTGGCTAAAAATTGAGGAAAAATATTTCGGGTCATTTTTTGCAAAATTTTAGCAGAAATCGTGT
131 TGTGGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCA-AAATCGTGT
* * * * * * * *
32195 -ACCATCAT--GATTTTTTGGATAAAAACGCGT-TCCAGAGCCCCACGGGTCAGTTTTGTATGAT
195 AACAATCATCACAGTTTTTGGCT-AAAA-GCGTGTCCAG-GGCCC-CGAGTCAGTTTTGCATGAG
** * * *
32256 TTTTTGTGGCAAAACT-C--GAAATATCTATATTCATCTAACCAAATTTTAGTCAAATTGGATTT
256 TTTTTGACGCAAAACTCCTTGAAATATCTATATTCATCTAACCAAA-TTCAG-CCAATTGCATTT
* * * * * * **
32318 AATGATTTATTTTTATGAGCATTTGAATCGTGTTTAGATTTAATTAGATATTAATT-TGAAAAAT
319 AA-GATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAATTCAAAAAAAT
32382 ATTGGAAAAACGATATTAGAAGCATGAGAAA-CCCTTCAATATTTTTGGCGTTGAATTATATATT
383 A-T-GAAAAACGATATTAGAAGCATGA-AAAGCCC-TCAATATTTTTGGCGTTGAATTATATA-T
* * * * *
32446 TTTTATG--AGTATTGTAGCTAAAAATTGA-G---AATATTTCGGGCCAATTTTTGTAGAATTTT
443 TTTTATGTTAGTATTGTAGCCAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATATT
** * * ** ** * * * * *
32505 AGTTGAAATCGTGTACCATCATGGT--TTTTTTTTTGC-C-AAAAACAC-ATACTGGGGCCCC-G
508 AGCCGAAATCATGTACCAACACAGTACAGTTTTCTT-CACGAAAAACGCGTTTC-AGGGCCCCAG
* * * * *
32564 AGTCAATTTTGCATGATTTTTTGACGCCAAGACTCCTTAAAATATTGTCTATATTCATTTAACCA
571 A-TCAATTTTGCATGATTTTTAG-CGCCAAGACTACTTGAAATA---TCTATATTCATCTAATCA
* *
32629 AATCTCAGCCACATTGTATTTAAGAA
631 AATCTCAGCCACATTGCATTTAAGGA
* * * * ** * * *
32655 TTTGTTTTTACGAGTATTTAAATCTTGTTTAAATTTAATCAAAAATTAATT-TGAAAAATAAAAT
1 ----TTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAAT---AT
* * * * *
32719 AGGAAAAATGATATTA-AGAGCGTGAAAAACGCTTTCAGTTTTTTTGGCGTTGAATTATATATTT
59 --GAAAAACGATATTAGA-AGCGTG-AAAACCCCTTCAATATTTTTGGCGTTGAATTATATATTT
* * * * * * * * *
32783 GTCATGAGTATTTTCGTTAGAAATTGAGAAAAAATCTTTCGGATCAATTTTTGCAAAATTTT
120 TTTATGAGTATTGTGGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTT
32845 TTGCCAAAAT
Statistics
Matches: 1226, Mismatches: 202, Indels: 156
0.77 0.13 0.10
Matches are distributed among these distances:
647 6 0.00
648 5 0.00
649 19 0.02
650 63 0.05
651 80 0.07
652 3 0.00
653 4 0.00
654 133 0.11
655 11 0.01
656 73 0.06
657 1 0.00
658 12 0.01
659 44 0.04
660 25 0.02
661 71 0.06
662 68 0.06
663 55 0.04
664 90 0.07
665 49 0.04
666 215 0.18
667 65 0.05
668 59 0.05
669 2 0.00
670 9 0.01
671 30 0.02
672 34 0.03
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (656 bp):
TTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAAC
GATATTAGAAGCGTGAAAACCCCTTCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGTAT
TGTGGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCAAAATCGTGTA
ACAATCATCACAGTTTTTGGCTAAAAGCGTGTCCAGGGCCCCGAGTCAGTTTTGCATGAGTTTTT
GACGCAAAACTCCTTGAAATATCTATATTCATCTAACCAAATTCAGCCAATTGCATTTAAGATTT
GTTTTTACGAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAATTCAAAAAAATATGAAAAA
CGATATTAGAAGCATGAAAAGCCCTCAATATTTTTGGCGTTGAATTATATATTTTTATGTTAGTA
TTGTAGCCAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATATTAGCCGAAATCATG
TACCAACACAGTACAGTTTTCTTCACGAAAAACGCGTTTCAGGGCCCCAGATCAATTTTGCATGA
TTTTTAGCGCCAAGACTACTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCATT
TAAGGA
Found at i:32539 original size:328 final size:331
Alignment explanation
Indices: 30667--32844 Score: 1610
Period size: 333 Copynumber: 6.6 Consensus size: 331
30657 TTGAAATATC
* *
30667 TAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATTAATTCAGAAAAA
1 TAAG-ATTTGTTTTTACGAGCATCTGAATCATGTTTAGATTTAATTAGAAATTAATTCAGAAAAA
* * *
30732 -ATAT-GAAAAATGATATT-GAAAGCGTGAAAATCCCTTCAATGTTTTTGGCGTTGAATTATATA
65 TAT-TGGAAAAACGATATTAG-AAGCGTGAAAAGCCCTTCAATATTTTTGGCGTTGAATTATATA
* * *
30794 TTTTTTTAATGAGTATTGTGGCTAAAAATTGAGAAAATATCTTTCGGATCAATTTTTGCAAAATT
128 -TTTTTT-ATGAGTATTGTAGCTAAAAATTGAGGAAATA--TTTCGGGTCAATTTTTGCAAAATT
** * * * * * *
30859 TTAACCGAAATCATGTAACAATCAT-CACGGTTTTTTTTTTGGCTAAAAATGCGTTCCAGAG-CC
189 TTAGTCGAAATCGTGT-ACCATCATGCA-----TTTTTTTTCGCTAAAAACGCGTTACAGGGCCC
** * * * * *** * * *
30922 CA--TTTCAGTTTTACATGAGTTTTGGTATCGAGACTCCTTGAAATATCTATATTCATCTAACCA
248 CACGGGTCAATTTTGCATGATTTTTTGCGCCAAAACTCC-TGAAATATCTATATTCATCTAATCA
30985 AA--T---CC-CA--GC---
312 AATCTCAGCCACATTGCATT
* * *
30994 ---CA-TTGTTTTTACAAAGCATCTGAATCATGTTTCA-ATTTAATTAAAAATTAATTCAGAAAA
1 TAAGATTTGTTTTTAC-GAGCATCTGAATCATGTTT-AGATTTAATTAGAAATTAATTCAGAAAA
* * * *
31054 A-ATAGGAAAAACGATATTAGAAGTGTGAAAAGCCCTTTAATCTTTTTGGCGTTGAATTATATAT
64 ATATTGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATATTTTTGGCGTTGAATTATATAT
* * * *
31118 TTTTCTGTTAGTATTGTGGCTAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATATT
129 TTTT-TATGAGTATTGTAGCTAAAAATTGAGG--AAATATTTCGGGTCAATTTTTGCAAAATTTT
* * * ** * * * * *
31183 AGCCGAAATCGTGTATCATCACAGTTTTTTTTTCCTTCTCTAAAAACGTGTTTCGGGGCCTCA--
191 AGTCGAAATCGTGTACCATCA-TG-CATTTTTT--TTCGCTAAAAACGCGTTACAGGGCCCCACG
* * * * *
31246 GATCAGTTTTGCATGATTTTTAGCGCCAAGACTACTTGAAATATCTATATTCATCTAATCAAATC
252 GGTCAATTTTGCATGATTTTTTGCGCCAAAACT-CCTGAAATATCTATATTCATCTAATCAAATC
*
31311 TCAGCCACATTGGATT
316 TCAGCCACATTGCATT
* * * *
31327 TAAGGATTTGTTTTTACGACCATCTAAATC-T-TATT---TCTAATTAGAAATTAATTCGGAAAA
1 TAA-GATTTGTTTTTACGAGCATCTGAATCATGT-TTAGATTTAATTAGAAATTAATTCAGAAAA
* *
31387 AGTA--GGAAAAACGATATTAGAAGCGTAAAAACCCCTTCAATATTTTTGGCGTTGAATTATATA
64 A-TATTGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATATTTTTGGCGTTGAATTATATA
* * *
31450 TTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGTAAAATTTT
128 TTTTTTATGAGTATTGTAGCTAAAAATTGAGGAAATA--TTTCGGGTCAATTTTTGCAAAATTTT
* ** *** * * * * *
31515 AGTCAAAATCGTGTAATAATCAT-CACAGTTTTTGGCTAAAAGCGTGATACAGGG-CCC-CGAGT
191 AGTCGAAATCGTGT-ACCATCATGCATTTTTTTTCGCTAAAAACGCGTTACAGGGCCCCACGGGT
* * * *
31577 CACTTTTGCATGA-TTTTTGACGCAAAAACTCCTTGAGATATCCATATTCATCTAATCAAATCTC
255 CAATTTTGCATGATTTTTTG-CGCCAAAACTCC-TGAAATATCTATATTCATCTAATCAAATCTC
*
31641 AGCCATATTGCATT
318 AGCCACATTGCATT
* * *
31655 TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTCGATTTAATTAGAAATTAATTCCAAAAA
1 TAA-GATTTGTTTTTACGAGCATCTGAATCATG-TTTAGATTTAATTAGAAATTAATT-CAGAAA
* * * * * *
31720 AATA-T-AAAAAACGATATGAAAAGCATGAAAAGTCC-TCAAATATTTTTGGCGTTAAATTATAT
63 AATATTGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTC-AATATTTTTGGCGTT-GA--AT-T
* * * *
31782 ATATATATATATTTATGAGTATTTTAGCCAAAAATTGAGGAAAATTTTTTCGGGTC-GTTTTTGC
123 ATATAT-T-T-TTTATGAGTATTGTAGCTAAAAATTGAGG-AAA-TATTTCGGGTCAATTTTTGC
* * * * * * *
31846 AAAATTTTA-TCCGAAATCATTTACCAACCATCACAGTTTTTTACG--AAAAACGCGTTTCAGGG
183 AAAATTTTAGT-CGAAATCGTGTACC-ATCAT-GCATTTTTTTTCGCTAAAAACGCGTTACAGGG
* * * * * *
31908 CCCCA--GTTCAATTTTGCATGATTTTTTG-GTATCGAGACTCCTTGAAATATCTGTATTTATCT
245 CCCCACGGGTCAATTTTGCATGATTTTTTGCG--CCAAAACTCC-TGAAATATCTATATTCATCT
31970 AATCAAATCTCAGCCACATTGCATT
307 AATCAAATCTCAGCCACATTGCATT
* * * * *
31995 TAAG----GATTTTACGAGCATATGAATCATATTTCGATTTGATTAGAAATTAATTCAGAAAAAT
1 TAAGATTTGTTTTTACGAGCATCTGAATCATGTTTAGATTTAATTAGAAATTAATTCAGAAAAAT
* * * * * * *
32056 A-T-GAAAAACCATATTAAAAGGGTGAAAAGTCCTCCAATATTTTTGGAGTTGAATTATATATAT
66 ATTGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATATTTTTGGCGTTGAATTATATATTT
* * * *
32119 TTTATAATTATTGTGGCTAAAAATTGAGGAAAAATATTTCGGGTCATTTTTTGCAAAATTTTAG-
131 TTTATGAGTATTGTAGCTAAAAATTGAGG--AAATATTTCGGGTCAATTTTTGCAAAATTTTAGT
* * * * *
32183 CAGAAATCGTGTACCATCATG-A--TTTTTTGGATAAAAACGCGTTCCAGAGCCCCACGGGTCAG
194 C-GAAATCGTGTACCATCATGCATTTTTTTTCGCTAAAAACGCGTTACAGGGCCCCACGGGTCAA
* * * * * * *
32245 TTTTGTATGATTTTTTGTGGCAAAACT-C-GAAATATCTATATTCATCTAACCAAATTTTAGTCA
258 TTTTGCATGATTTTTTGCGCCAAAACTCCTGAAATATCTATATTCATCTAATCAAATCTCAGCCA
* *
32308 AATTGGATT
323 CATTGCATT
* * * * * *
32317 TAATGATTTATTTTTATGAGCATTTGAATCGTGTTTAGATTTAATTAGATATTAATT-TGAAAAA
1 TAA-GATTTGTTTTTACGAGCATCTGAATCATGTTTAGATTTAATTAGAAATTAATTCAGAAAAA
*
32381 TATTGGAAAAACGATATTAGAAGCATGAGAAA-CCCTTCAATATTTTTGGCGTTGAATTATATAT
65 TATTGGAAAAACGATATTAGAAGCGTGA-AAAGCCCTTCAATATTTTTGGCGTTGAATTATATAT
* * *
32445 TTTTTATGAGTATTGTAGCTAAAAATTGA-G-AATATTTCGGGCCAATTTTTGTAGAATTTTAGT
129 TTTTTATGAGTATTGTAGCTAAAAATTGAGGAAATATTTCGGGTCAATTTTTGCAAAATTTTAGT
* ** * * * * * * *
32508 TGAAATCGTGTACCATCATGGTTTTTTTTTTGCCAAAAACAC-ATACTGGGGCCC-CGAGTCAAT
194 CGAAATCGTGTACCATCATGCATTTTTTTTCGCTAAAAACGCGTTACAGGGCCCCACGGGTCAAT
* * * *
32571 TTTGCATGATTTTTTGACGCCAAGACTCCTTAAAATATTGTCTATATTCATTTAACCAAATCTCA
259 TTTGCATGATTTTTTG-CGCCAAAACTCC-TGAAATA---TCTATATTCATCTAATCAAATCTCA
*
32636 GCCACATTGTATT
319 GCCACATTGCATT
* * * * * * * *
32649 TAAGAATTTGTTTTTACGAGTATTTAAATCTTGTTTAAATTTAATCAAAAATTAATT-TGAAAAA
1 TAAG-ATTTGTTTTTACGAGCATCTGAATCATGTTTAGATTTAATTAGAAATTAATTCAGAAAAA
* * * * * *
32713 TAAAATAGGAAAAATGATATTA-AGAGCGTGAAAAACGCTTTCAGTTTTTTTGGCGTTGAATTAT
65 T---ATTGGAAAAACGATATTAGA-AGCGTGAAAAGC-CCTTCAATATTTTTGGCGTTGAATTAT
* * * * * * * * *
32777 ATATTTGTCATGAGTATTTTCGTTAGAAATTGAGAAAAAATCTTTCGGATCAATTTTTGCAAAAT
125 ATATTTTTTATGAGTATTGTAGCTAAAAATTGAG--GAAATATTTCGGGTCAATTTTTGCAAAAT
32842 TTT
188 TTT
32845 TTGCCAAAAT
Statistics
Matches: 1492, Mismatches: 252, Indels: 201
0.77 0.13 0.10
Matches are distributed among these distances:
319 6 0.00
321 21 0.01
322 172 0.12
323 100 0.07
324 76 0.05
325 27 0.02
326 81 0.05
327 99 0.07
328 182 0.12
329 16 0.01
330 13 0.01
331 2 0.00
332 147 0.10
333 194 0.13
334 35 0.02
335 45 0.03
336 56 0.04
337 18 0.01
338 14 0.01
339 55 0.04
340 122 0.08
341 10 0.01
342 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (331 bp):
TAAGATTTGTTTTTACGAGCATCTGAATCATGTTTAGATTTAATTAGAAATTAATTCAGAAAAAT
ATTGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATATTTTTGGCGTTGAATTATATATTT
TTTATGAGTATTGTAGCTAAAAATTGAGGAAATATTTCGGGTCAATTTTTGCAAAATTTTAGTCG
AAATCGTGTACCATCATGCATTTTTTTTCGCTAAAAACGCGTTACAGGGCCCCACGGGTCAATTT
TGCATGATTTTTTGCGCCAAAACTCCTGAAATATCTATATTCATCTAATCAAATCTCAGCCACAT
TGCATT
Found at i:41389 original size:6 final size:6
Alignment explanation
Indices: 41378--41408 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
41368 AGGCTGCACT
41378 ACAATC ACAATC ACAATC ACAATC ACAATC A
1 ACAATC ACAATC ACAATC ACAATC ACAATC A
41409 TCCGTTAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (6 bp):
ACAATC
Found at i:43598 original size:31 final size:30
Alignment explanation
Indices: 43560--43636 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 30
43550 TTTAAACAGG
43560 ACCAAATTGGACCTAAACCTTAGTAAATTGC
1 ACCAAATTGG-CCTAAACCTTAGTAAATTGC
**
43591 ACCAAATTTGGCCTAAATGTTAGTAAATTGC
1 ACCAAA-TTGGCCTAAACCTTAGTAAATTGC
*
43622 ATCAAATTAGGCCTA
1 ACCAAATT-GGCCTA
43637 TTTTGGACGG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
30 2 0.05
31 35 0.85
32 4 0.10
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (30 bp):
ACCAAATTGGCCTAAACCTTAGTAAATTGC
Found at i:56166 original size:33 final size:33
Alignment explanation
Indices: 56129--56196 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
56119 GTCAAGTCGC
*
56129 GGTCCGATCGCGACCCA-ATCGTGACCTGACCAT
1 GGTCCGATCGCGA-CCATATCGCGACCTGACCAT
* * *
56162 GGTCCGGTTGCGACCATATCGCGACTTGACCAT
1 GGTCCGATCGCGACCATATCGCGACCTGACCAT
56195 GG
1 GG
56197 CCTAGTCACA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 3 0.10
33 27 0.90
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (33 bp):
GGTCCGATCGCGACCATATCGCGACCTGACCAT
Found at i:56583 original size:2 final size:2
Alignment explanation
Indices: 56576--56601 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
56566 TTAATATGAA
56576 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
56602 GATTTTTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58900 original size:34 final size:34
Alignment explanation
Indices: 58857--58921 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
58847 AAAAAAAAAA
58857 AAACAATTTATACTATATTATTACTTGCCTATTC
1 AAACAATTTATACTATATTATTACTTGCCTATTC
58891 AAACAATTTATACTATATTATTACTTGCCTA
1 AAACAATTTATACTATATTATTACTTGCCTA
58922 ATATACTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.43
Consensus pattern (34 bp):
AAACAATTTATACTATATTATTACTTGCCTATTC
Found at i:60578 original size:18 final size:21
Alignment explanation
Indices: 60555--60593 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
60545 AATCAGGTTT
60555 AGATGTT-C-TCTGC-AGTTG
1 AGATGTTACTTCTGCAAGTTG
60573 AGATGTTACTTCTGCAAGTTG
1 AGATGTTACTTCTGCAAGTTG
60594 CTTAAAAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 5 0.28
21 5 0.28
ACGTcount: A:0.21, C:0.15, G:0.26, T:0.38
Consensus pattern (21 bp):
AGATGTTACTTCTGCAAGTTG
Found at i:68274 original size:4 final size:4
Alignment explanation
Indices: 68265--68291 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
68255 CGTCTACACC
68265 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
68292 TCTGCTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:71317 original size:622 final size:622
Alignment explanation
Indices: 70134--71383 Score: 2126
Period size: 622 Copynumber: 2.0 Consensus size: 622
70124 CCACGCTTCT
* *
70134 AATATCGTTTTTTCTATTTTTTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTG
1 AATATCGGTTTTTCTATTTTTTCCGAATTAATTCATAATTGAATCGAAACATGATTCATATGTTG
*
70199 GTAAAAACAAATCCTTGAATCCAATGTGGGTAAGATTTGGTTAGATGAATATAGATATTTCAATG
66 GTAAAAACAAATCCTTGAATCAAATGTGGGTAAGATTTGGTTAGATGAATATAGATATTTCAATG
*
70264 AGACTTGGCGCAAAAAATCATGCAAAACAGAGCCGGGACACCGAAACGTGTTTTTAGTCAAAAAA
131 AGACTTGGCGCAAAAAATCATGCAAAACAGAGCCGGGACACCGAAACGCGTTTTTAGTC-AAAAA
* *
70329 TTGTTATGATTAGTACACGATTTCGGCTAAAATTTTGCCAAAATTGACACGAAACATTTCTCTTC
195 CTGTGATGATTAGTACACGATTTCGGCTAAAATTTTGCCAAAATTGACACGAAACATTTCTCTTC
*
70394 AATTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGTCAAATATATTGAAGGGCTTCTC
260 AATTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGTCAAATATATTGAACGGCTTCTC
* * * * * *
70459 ACGCTTCTAATATTGTTTTTTATTTCTATTTTTTCCGAATTAATTTCTAATTGAATCGAAACCAG
325 ACGCTTCTAATATTATTATTTATTTCTATATTTTCCGAATCAATTTCAAATTAAATCGAAACCAG
*
70524 ATTGAGATGCTCATAAAAACAAATCCTTAAATCTAATGTGGCTGAAATTTTGTTAGATAAATATA
390 ATTGAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGCTGAAATTTTGTTAGATAAATATA
* * * *
70589 GATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCTACGAAATGCGTTT
455 GATATTTCAATGAGTCTTGGCGCCAAAAATAATGAAAAACTGAGCCGGGGCCACGAAACGCGTTT
* *
70654 TTAGCCAAAAACCGTGATCGTTAGTACACGATTTTGGCTAAAATTTTGTAAAAATTGACCCAAAA
520 TTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCAAAA
70719 GAATTTTTCCCAA-TTTTTGGCCACGATACTCATAGAA
585 GAATTTTTCCCAATTTTTTGGCCACGATACTCATAGAA
* *
70756 AATATCGGTTTTTCTATTTTTTTTCTGAATTACTTCATAATTGAATCGAAACATGATTCATATGT
1 AATATCGGTTTTTCTA--TTTTTTCCGAATTAATTCATAATTGAATCGAAACATGATTCATATGT
*
70821 TGGTAAAAACAAATCCTTGAATCAAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAA
64 TGGTAAAAACAAATCCTTGAATCAAATGTGGGTAAGATTTGGTTAGATGAATATAGATATTTCAA
* * * *
70886 TTAGACTTGGCGCCAAAAATCATGCAAAACAGAGCTGGGACCCCGAAACGCGTTTTTAGTC-AAA
129 TGAGACTTGGCGCAAAAAATCATGCAAAACAGAGCCGGGACACCGAAACGCGTTTTTAGTCAAAA
*
70950 ACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCCAAAATTGACACGAAACATTTCTCTT
194 ACTGTGATGATTAGTACACGATTTCGGCTAAAATTTTGCCAAAATTGACACGAAACATTTCTCTT
71015 CAATTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGTCAAATATATTGAACGGCTTCT
259 CAATTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGTCAAATATATTGAACGGCTTCT
*
71080 CACGCTTCTAATATTATTATTTATTTCTATATTTTCCGAATCAATTTCAAATTAAATCGAAACCG
324 CACGCTTCTAATATTATTATTTATTTCTATATTTTCCGAATCAATTTCAAATTAAATCGAAACCA
* *
71145 GATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTTGTTAGATAAATAT
389 GATTGAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGCTGAAATTTTGTTAGATAAATAT
* *
71210 TGATATTTCAATGAGTCTTGGCGCCAAAAATAATGAAAAATTGAGCCGGGGCCACGAAACGCGTT
454 AGATATTTCAATGAGTCTTGGCGCCAAAAATAATGAAAAACTGAGCCGGGGCCACGAAACGCGTT
*
71275 TTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAGTTGACCCAAA
519 TTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCAAA
* * *
71340 AGAGTTTTTCTCAATTTTTTGGCCACGATACTCATATAA
584 AGAATTTTTCCCAATTTTTTGGCCACGATACTCATAGAA
71379 AATAT
1 AATAT
71384 ATAATTCAAC
Statistics
Matches: 588, Mismatches: 37, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
622 397 0.68
623 28 0.05
624 163 0.28
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33
Consensus pattern (622 bp):
AATATCGGTTTTTCTATTTTTTCCGAATTAATTCATAATTGAATCGAAACATGATTCATATGTTG
GTAAAAACAAATCCTTGAATCAAATGTGGGTAAGATTTGGTTAGATGAATATAGATATTTCAATG
AGACTTGGCGCAAAAAATCATGCAAAACAGAGCCGGGACACCGAAACGCGTTTTTAGTCAAAAAC
TGTGATGATTAGTACACGATTTCGGCTAAAATTTTGCCAAAATTGACACGAAACATTTCTCTTCA
ATTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGTCAAATATATTGAACGGCTTCTCA
CGCTTCTAATATTATTATTTATTTCTATATTTTCCGAATCAATTTCAAATTAAATCGAAACCAGA
TTGAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGCTGAAATTTTGTTAGATAAATATAG
ATATTTCAATGAGTCTTGGCGCCAAAAATAATGAAAAACTGAGCCGGGGCCACGAAACGCGTTTT
TAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCAAAAG
AATTTTTCCCAATTTTTTGGCCACGATACTCATAGAA
Found at i:71890 original size:336 final size:334
Alignment explanation
Indices: 70774--71945 Score: 1501
Period size: 336 Copynumber: 3.5 Consensus size: 334
70764 TTTTTCTATT
* * * ** * * * *
70774 TTTTTTCTGAATT-ACTTCATAATTGAATCGAAACATGATTCATATGTTGGTAAAAACAAATCCT
1 TTTTTTCCGAATTAATTTC-TAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCT
* * * ** *
70838 TGAATCAAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATTAGACTTGGCGCCAAA
65 TAAATCCAATGTGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGACTTGGCGCCAAA
*
70903 AATCATGCAAAACAGAGCTGGGACCCCGAAACGCGTTTTTAGTCAAAACTGTGATGGTTAGTACA
130 AATCATGCAAAACAGAGCTGGGACCCCGAAACGCGTTTTTAGTAAAAACTGTGATGGTTAGTACA
*
70968 CGATTTCGGCTAAAATTTTGCCAAAATTGACACGAAACATTTCTCTTCAATTTCCGGCCACCATA
195 CGATTTCGGCTAAAATTTTGCAAAAATTGACACGAAACATTTCTCTTCAATTTCCGGCCACCATA
* *
71033 TTCATAAAAAATATATAACTCAACGTCAAATATATTGAACGGCTTCTCACGCTTCTAATATTATT
260 TTCATAAAAAATATATAACTCAACGTCAAATATATTGAAAGGCTTCTCACGCTTCTAATATTGTT
71098 ATTTATTTCTA
325 -TTTATTTCTA
* * *
71109 TATTTTCCGAATCAATTTCAAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTT
1 TTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTT
* * * *
71174 AAATCCAATGTGGCTGAGATTTTGTTAGATAAATATTGATATTTCAATGAGTCTTGGCGCCAAAA
66 AAATCCAATGTGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGACTTGGCGCCAAAA
* * ** * * * * * *
71239 ATAATGAAAAATTGAGCCGGGGCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACA
131 ATCATGCAAAACAGAGCTGGGACCCCGAAACGCGTTTTTAG-TAAAAACTGTGATGGTTAGTACA
* * * * * * ** *
71304 CGATTTCGGCTAAAATTTTGTAAAAGTTGACCCAAAAGAGTTTTTC-TCAATTTTTTGGCCACGA
195 CGATTTCGGCTAAAATTTTGCAAAAATTGACACGAAACA-TTTCTCTTCAA-TTTCCGGCCACCA
* * * * * * *
71368 TACTCATATAAAATATATAATTCAACATCAAAAAGATTGAAAGGCTAT-TCACGCTTCTAATATC
258 TATTCATAAAAAATATATAACTCAACGTCAAATATATTGAAAGGCT-TCTCACGCTTCTAATATT
*
71432 G--TTT-TTCCTA
322 GTTTTTATTTCTA
* * ** * * * *
71442 TTTTTTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTGGTAAAAACAAATCCTT
1 TTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTT
* * * **
71507 AAATCCATTCTGGGTAAGATTTGGTTAGATCGATATAGATATTTCAATGAGACTTGGCGCCAAAA
66 AAATCCAATGTGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGACTTGGCGCCAAAA
*
71572 ATCATGCAAAACAGAGATGGGACCCCGAAACGCGTTTTTAGTAAAAAACTGTGATGGTTAGTACA
131 ATCATGCAAAACAGAGCTGGGACCCCGAAACGCGTTTTTAGT-AAAAACTGTGATGGTTAGTACA
* *
71637 TGATTTCGGCTAAAATTTTGCAAAAATTGACACGAAACATTTCTCTTCAATTTCCCGCCACCATA
195 CGATTTCGGCTAAAATTTTGCAAAAATTGACACGAAACATTTCTCTTCAATTTCCGGCCACCATA
*
71702 TTCATAAAAAATATATAACTCAACGTCAAATATATTGAAGGGCTTCTCACGCTTCTAATATTGTT
260 TTCATAAAAAATATATAACTCAACGTCAAATATATTGAAAGGCTTCTCACGCTTCTAATATTG-T
71767 TTTTATTTCTA
324 TTTTATTTCTA
* *
71778 TTTTTTCCGAATTAATTTCTATTTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAGTCCTT
1 TTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTT
* * *
71843 AAATCCAATGTGGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAA
66 AAATCCAATGTGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGACTTGGCGCCAAAA
* * * * **
71908 ATCATGCAAACCTGAGCCGGGGCTACGAAACGCGTTTT
131 ATCATGCAAAACAGAGCTGGGACCCCGAAACGCGTTTT
71946 AAAA
Statistics
Matches: 696, Mismatches: 129, Indels: 23
0.82 0.15 0.03
Matches are distributed among these distances:
331 1 0.00
332 69 0.10
333 205 0.29
334 3 0.00
335 140 0.20
336 208 0.30
337 69 0.10
338 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (334 bp):
TTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTT
AAATCCAATGTGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGACTTGGCGCCAAAA
ATCATGCAAAACAGAGCTGGGACCCCGAAACGCGTTTTTAGTAAAAACTGTGATGGTTAGTACAC
GATTTCGGCTAAAATTTTGCAAAAATTGACACGAAACATTTCTCTTCAATTTCCGGCCACCATAT
TCATAAAAAATATATAACTCAACGTCAAATATATTGAAAGGCTTCTCACGCTTCTAATATTGTTT
TTATTTCTA
Done.