genome.fa.s15219.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015219.1 Corchorus olitorius cultivar O-4 contig15252, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60026

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5114--5312	54	3.7	54	85	2	213	28	17	20	34	1.95
5320--5871	35	15.8	35	89	0	757	28	14	19	37	1.91
5846--6121	54	5.2	53	81	8	290	29	19	22	28	1.98
5841--6121	107	2.6	106	80	7	309	29	19	21	29	1.97
6099--6162	33	1.9	33	87	0	92	29	12	20	37	1.89
6141--6355	54	4.0	55	83	1	256	27	16	21	34	1.95
5892--6352	248	1.9	248	82	5	590	28	18	21	32	1.96
15548--16152	87	6.9	85	80	11	545	21	26	17	34	1.95
15544--16164	46	14.3	43	76	14	519	21	26	16	35	1.95
15544--16152	219	2.8	217	92	2	997	21	26	17	34	1.95
16231--16422	40	4.8	40	84	5	203	15	25	21	37	1.93
16231--16595	88	4.4	80	80	10	260	13	25	21	39	1.90
16391--16560	48	3.7	48	71	12	167	11	24	22	42	1.86
16353--16603	88	2.9	88	91	0	403	12	25	20	41	1.88
16273--16603	40	7.8	43	74	15	198	14	24	20	40	1.89
17924--17956	15	2.1	16	88	5	50	60	3	21	15	1.48
20017--20052	19	1.9	18	88	5	54	33	22	2	41	1.68
27732--27771	15	2.6	16	92	4	64	12	10	12	65	1.49
32679--32705	13	2.1	13	100	0	54	7	40	0	51	1.30
34086--34624	53	10.2	53	91	0	835	45	5	18	30	1.71
34874--34909	19	1.9	18	88	5	54	41	2	22	33	1.68
36415--36466	26	2.0	26	96	0	95	40	7	17	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44259--44542	21	13.4	21	80	9	269	52	4	21	21	1.65
44343--44507	7	23.3	7	70	11	104	54	3	21	20	1.59
44259--44585	64	5.2	64	77	14	281	51	5	21	21	1.67
44259--44542	43	6.7	43	81	12	288	52	4	21	21	1.65
44608--44717	27	4.0	26	76	11	96	60	2	20	16	1.48
45452--45484	14	2.4	14	90	5	50	72	0	3	24	0.98
50875--50947	37	2.0	38	89	5	114	35	6	21	35	1.81
51822--51863	20	2.2	20	86	4	59	21	14	16	47	1.82
52121--52150	2	15.0	2	100	0	60	50	0	0	50	1.00
56244--56277	2	17.0	2	100	0	68	50	0	0	50	1.00
56318--56570	128	2.0	128	95	0	452	37	13	8	39	1.76
59514--59593	28	2.9	27	83	12	110	16	13	23	46	1.83

Tables:   1

The End!