Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015226.1 Corchorus olitorius cultivar O-4 contig15259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78396

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--40
18
1.9
18
94
0
61
28
8
11
51
1.67
1310--1375
26
2.5
27
80
7
73
59
3
3
34
1.28
1351--1404
17
3.2
17
84
5
65
55
3
3
37
1.35
1615--1792
33
5.4
34
75
6
100
14
35
35
14
1.86
8882--9082
101
2.0
101
99
0
393
39
18
16
25
1.91
11392--11604
107
2.0
107
94
0
338
45
8
13
32
1.73
15153--15214
30
2.1
30
100
0
124
45
12
11
30
1.78
16168--16250
30
3.0
27
84
10
121
50
3
3
42
1.37
19441--19477
18
2.2
18
85
9
51
13
32
32
21
1.92
21176--21289
40
2.8
41
88
7
162
38
15
15
29
1.89
21197--21512
95
3.2
94
83
7
294
37
17
14
30
1.90
21258--21512
52
5.1
52
85
8
348
37
17
15
29
1.90
21400--21489
28
3.4
28
63
12
80
35
18
15
30
1.92
21539--21571
17
1.9
17
93
0
57
21
0
12
66
1.23
36631--36667
18
2.1
18
94
0
65
37
8
5
48
1.56
37263--37289
9
3.0
9
100
0
54
22
22
22
33
1.97
40496--40535
15
2.6
16
88
4
55
62
12
10
15
1.54
43410--43441
15
2.2
14
94
5
55
56
6
15
21
1.62
46105--46136
14
2.2
15
94
5
57
78
12
3
6
1.06
46602--46641
15
2.6
16
84
8
55
62
12
7
17
1.52
54619--54953
29
11.7
29
78
8
344
41
21
18
18
1.91
54619--54952
114
2.9
113
78
10
358
41
21
18
18
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57280--57352
27
2.7
26
81
8
92
20
19
26
34
1.96
70666--70696
15
2.1
15
93
0
53
19
38
0
41
1.51
70661--70774
39
3.1
39
87
12
193
24
34
0
41
1.55
70705--70769
15
4.1
15
75
14
67
21
38
0
40
1.54
70661--70762
34
2.9
34
92
7
159
23
37
0
39
1.55
70693--70745
17
3.0
19
68
21
60
24
37
0
37
1.56
77468--77519
24
2.2
24
96
0
95
30
19
21
28
1.97
77464--77513
12
4.2
12
94
0
91
24
22
28
26
1.99

Tables:   1

The End!