genome.fa.s15230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015230.1 Corchorus olitorius cultivar O-4 contig15263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153969

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11712--11776	27	2.4	27	84	2	87	20	20	26	33	1.96
11716--11822	26	4.1	26	86	1	115	16	17	24	41	1.90
15428--15475	21	2.3	22	86	13	66	72	6	12	8	1.26
20208--20346	72	1.9	72	91	2	226	25	27	15	32	1.95
27129--27164	19	1.9	18	88	5	54	33	22	2	41	1.68
27129--27175	11	4.7	10	80	17	53	31	21	6	40	1.78
27846--27880	18	1.9	18	88	0	52	40	8	2	48	1.49
29816--29840	6	4.2	6	100	0	50	84	0	16	0	0.63
31375--31410	19	1.9	19	88	5	56	30	22	2	44	1.67
31375--31421	11	4.7	10	80	17	53	29	21	6	42	1.77
33319--33349	6	5.0	6	92	7	53	3	0	16	80	0.83
36904--36939	18	2.1	17	89	5	54	61	8	16	13	1.56
37887--37935	25	2.0	25	95	0	89	26	12	22	38	1.89
43573--43615	21	2.0	21	100	0	86	58	13	9	18	1.62
43575--43612	10	3.7	10	80	19	51	57	13	7	21	1.60
49461--49485	11	2.3	11	100	0	50	68	8	16	8	1.38
50061--50119	30	2.0	30	86	6	84	35	16	6	40	1.76
50519--50560	15	2.7	15	92	3	66	64	14	9	11	1.50
51321--51346	11	2.4	11	100	0	52	69	7	15	7	1.35
53867--53916	20	2.4	21	90	6	84	14	24	44	18	1.86
53848--53921	21	3.6	21	83	3	87	14	22	44	17	1.86
57438--57479	15	2.7	15	92	3	66	64	14	9	11	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59558--59617	29	2.1	29	96	0	111	36	11	25	26	1.90
65146--65171	13	2.0	13	100	0	52	53	23	7	15	1.67
73445--73810	35	10.5	35	91	2	601	31	16	21	30	1.95
74067--74165	28	3.5	28	87	0	144	17	15	26	41	1.88
79311--79509	69	2.9	69	86	0	281	27	27	15	30	1.96
79311--79533	69	3.2	69	82	0	275	27	26	15	29	1.96
79935--80049	39	2.9	39	75	10	110	23	13	16	46	1.83
80331--80403	27	2.7	27	91	0	110	17	16	27	38	1.91
88340--88371	16	1.9	17	93	6	57	9	9	0	81	0.88
93355--93403	21	2.3	21	85	3	62	55	0	10	34	1.34
93444--93517	32	2.3	32	76	4	78	24	39	31	5	1.78
95657--95710	21	2.6	21	87	0	72	16	44	22	16	1.86
100832--100978	32	4.6	32	90	0	222	21	27	23	27	1.99
101044--101079	2	18.5	2	88	5	56	50	0	0	50	1.00
111717--112267	134	4.1	132	82	7	673	27	19	15	37	1.92
111718--112267	269	2.0	268	97	0	1037	27	19	15	37	1.92
112155--112348	101	1.9	100	96	1	361	24	15	16	43	1.87
114476--114532	29	2.0	29	100	0	114	24	21	17	36	1.94
116302--116361	30	2.0	30	96	0	111	30	13	28	28	1.94
118641--118671	15	2.1	15	93	0	53	22	35	0	41	1.54
126565--126614	21	2.4	21	83	6	66	6	30	40	24	1.79
138866--138967	51	2.0	50	81	5	116	20	22	14	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141270--141422	76	2.0	76	83	5	193	26	30	26	16	1.97
147450--147492	22	2.0	22	100	0	86	18	4	11	65	1.42
147841--147877	18	2.1	18	89	0	56	45	5	10	37	1.62

Tables:   1

The End!