genome.fa.s15234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015234.1 Corchorus olitorius cultivar O-4 contig15267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45350

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204--251	22	2.2	22	84	0	60	25	14	8	52	1.69
219--330	45	2.5	45	81	5	127	35	17	11	34	1.86
246--317	23	3.1	22	73	13	65	40	16	9	33	1.81
261--350	45	2.0	46	82	6	112	40	17	10	32	1.83
400--1449	44	24.4	43	67	16	301	35	17	9	37	1.82
400--502	45	2.3	45	83	5	120	36	15	11	35	1.84
219--690	22	21.6	22	69	13	244	35	16	10	37	1.83
796--939	22	6.5	22	75	9	89	34	13	10	41	1.79
815--939	66	1.9	66	83	0	160	33	13	10	42	1.78
925--1021	22	4.4	22	73	19	69	32	16	9	41	1.80
1048--1123	22	3.5	22	82	5	93	42	14	5	38	1.68
1062--1210	22	6.7	22	72	13	108	38	18	7	36	1.79
1219--1306	22	3.9	22	75	11	72	40	17	5	36	1.73
1319--1415	22	4.4	22	75	10	99	35	17	11	36	1.86
2669--2715	10	4.6	10	85	12	60	48	0	17	34	1.47
2672--2715	6	8.2	6	80	19	53	50	0	18	31	1.47
2732--2767	18	2.0	18	100	0	72	38	11	16	33	1.84
6097--6135	7	5.6	7	82	11	53	53	0	0	46	1.00
7958--8030	38	1.9	38	94	0	128	47	5	13	32	1.66
9640--9832	99	1.9	101	86	4	275	45	15	10	28	1.79
10668--10693	2	13.0	2	100	0	52	50	0	0	50	1.00
10732--10762	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10812--10864	20	2.5	20	93	6	88	26	16	24	32	1.97
17624--17782	28	5.7	27	80	7	167	18	20	24	36	1.95
17628--17782	55	2.8	55	82	2	159	19	20	23	36	1.95
19951--19985	2	17.5	2	100	0	70	0	48	0	51	1.00
21129--21158	11	2.7	11	100	0	60	16	0	26	56	1.40
23719--23753	18	1.9	18	88	11	54	42	2	22	31	1.68
27773--27858	38	2.2	40	90	10	135	61	9	18	10	1.54
33328--33382	21	2.6	21	82	0	65	18	49	20	12	1.79
35764--35793	12	2.4	13	88	11	53	66	13	6	13	1.43
39058--39686	59	10.4	59	86	6	832	28	15	18	38	1.91
39058--39686	181	3.5	177	87	4	882	28	15	18	38	1.91
39059--39686	241	2.6	240	90	3	969	28	15	18	38	1.91
39932--40090	53	2.9	54	83	4	158	18	19	24	37	1.94
39932--40090	28	5.8	28	75	8	157	18	19	24	37	1.94

Tables:   1

The End!