Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015237.1 Corchorus olitorius cultivar O-4 contig15270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1128
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27


Found at i:521 original size:18 final size:19

Alignment explanation


    Indices: 498--534  Score: 67
    Period size: 18  Copynumber: 2.0  Consensus size: 19

        488 CACCCTAGCC

                               
        498 CTAAAACTAGAAGA-AAAA
          1 CTAAAACTAGAAGAGAAAA

                               
        516 CTAAAACTAGAAGAGAAAA
          1 CTAAAACTAGAAGAGAAAA

        535 AGAAGAAGAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18   14  0.78
  19    4  0.22

ACGTcount: A:0.65, C:0.11, G:0.14, T:0.11


Consensus pattern (19 bp):   
CTAAAACTAGAAGAGAAAA
Done.