genome.fa.s15242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015242.1 Corchorus olitorius cultivar O-4 contig15275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7666

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712--759	19	2.5	19	86	3	60	45	4	6	43	1.48
581--1106	51	10.5	51	80	9	507	41	3	15	38	1.66
583--1119	201	2.7	199	86	6	689	41	3	15	38	1.66
643--1143	100	5.0	97	75	13	242	42	4	15	37	1.67
1102--1280	50	3.6	50	78	5	157	44	6	16	32	1.72
1113--1223	50	2.2	50	91	1	179	46	5	15	32	1.68
1907--2011	48	2.2	48	91	0	165	13	19	21	45	1.84
2057--2122	20	3.3	20	93	0	114	13	12	12	62	1.56
1989--2184	88	2.2	88	90	3	297	13	18	16	51	1.77
2146--2190	20	2.2	20	96	0	81	15	17	8	57	1.63
2076--2232	68	2.3	68	91	2	244	14	19	17	49	1.80
1946--2231	156	1.8	156	91	1	475	14	19	18	47	1.82
2166--2279	48	2.4	48	88	2	158	15	19	18	46	1.84
2097--2354	116	2.2	116	90	1	410	13	18	18	48	1.81
2260--2306	20	2.3	20	88	0	67	19	12	8	59	1.58
2212--2708	68	7.3	68	77	5	513	13	18	17	50	1.79
2328--2374	20	2.3	20	96	0	85	12	10	10	65	1.46
2396--2441	20	2.3	20	92	0	74	15	10	8	65	1.47
2212--2509	135	2.2	136	92	3	510	13	17	16	52	1.75
2466--2523	20	2.9	20	92	0	89	17	15	5	62	1.50
2398--2569	88	2.0	88	95	2	310	14	17	15	52	1.74
2465--2529	20	3.2	20	84	6	87	15	15	7	61	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2504--2618	48	2.4	48	89	2	178	14	20	19	45	1.85
1943--2706	339	2.2	340	86	2	1009	14	19	17	49	1.80
2600--2638	20	2.0	20	85	10	53	20	15	7	56	1.63
1907--2759	204	4.2	202	73	9	755	13	19	18	48	1.81
2671--2729	20	3.0	20	89	0	100	16	15	8	59	1.60
3240--3277	15	2.6	15	83	4	51	0	7	23	68	1.16
6407--6478	28	2.5	29	86	2	101	19	16	27	36	1.93
6604--6689	41	2.1	41	97	0	163	26	11	9	52	1.68

Tables:   1

The End!