Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015246.1 Corchorus olitorius cultivar O-4 contig15279, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14605

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2176--2241
20
3.3
20
89
0
96
15
12
9
63
1.51
2216--2337
48
2.5
48
89
0
181
13
18
18
49
1.80
2264--3334
68
15.8
68
74
5
858
14
19
17
48
1.80
2312--2357
20
2.3
20
92
0
74
15
15
8
60
1.57
2379--2425
20
2.3
20
96
0
85
12
10
10
65
1.46
2448--2493
20
2.3
20
96
0
83
15
13
8
63
1.52
2513--2573
20
3.0
20
85
0
68
14
9
9
65
1.46
2445--2621
88
2.0
88
93
2
302
14
15
15
53
1.73
2538--2581
20
2.2
20
91
0
70
18
11
6
63
1.48
2556--2677
48
2.5
48
89
2
183
13
18
19
48
1.81
2652--2697
20
2.3
20
88
0
65
15
17
8
58
1.61
2719--2758
20
2.0
20
100
0
80
15
10
10
65
1.48
2788--2834
20
2.3
20
88
0
67
14
8
8
68
1.39
2791--2964
88
2.0
88
93
2
296
15
16
14
54
1.72
2857--2922
20
3.3
20
89
0
96
16
12
7
63
1.50
2897--3017
48
2.5
47
90
7
190
14
18
18
48
1.81
2993--3037
20
2.2
20
84
0
54
15
17
11
55
1.68
2996--3166
88
2.0
87
89
3
263
14
19
16
49
1.79
3061--3126
20
3.3
20
84
0
96
15
15
9
60
1.58
3101--3221
48
2.5
48
88
9
185
12
18
19
50
1.77
3196--3241
20
2.3
20
88
0
65
15
17
8
58
1.61
2739--3308
203
2.8
204
92
1
939
14
19
17
49
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7449--7484
19
1.9
18
88
5
54
27
22
8
41
1.82
9014--9069
16
3.4
16
71
11
51
58
3
12
25
1.50
13441--13466
11
2.4
11
100
0
52
7
15
7
69
1.35

Tables:   1

The End!