Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015248.1 Corchorus olitorius cultivar O-4 contig15281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42028

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2012--2037
11
2.4
11
100
0
52
7
15
7
69
1.35
2797--2829
14
2.2
16
89
10
52
15
3
15
66
1.37
4449--4484
19
1.9
18
88
5
54
27
22
8
41
1.82
8213--8252
19
2.2
19
86
13
57
17
0
7
75
1.03
14915--14974
29
2.0
30
87
6
86
35
8
18
38
1.81
21555--21609
21
2.6
21
94
0
101
27
43
12
16
1.84
24848--24872
6
4.2
6
100
0
50
84
0
16
0
0.63
26314--26368
19
2.7
21
78
18
62
38
18
3
40
1.68
32752--32802
19
2.7
19
77
14
61
47
0
1
50
1.12
38323--38352
12
2.4
13
88
11
53
66
13
6
13
1.43
40272--40370
32
3.1
32
97
0
180
23
18
26
32
1.97
41895--41929
17
2.1
17
94
0
61
54
17
8
20
1.68

Tables:   1

The End!