Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015251.1 Corchorus olitorius cultivar O-4 contig15284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5553
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:4075 original size:32 final size:32

Alignment explanation


    Indices: 4007--4077  Score: 81
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       3997 TCGGTATAGT

                                *     *    *
       4007 CCGGGCCATGGCCTGGCTTGTCTCGGTCATGG
          1 CCGGGCCATGGCCTGGCTTGGCTCGGACATGC

                 *                  *        
       4039 CCGGGTCATGGCC-GGCTGTGGCTTGGACATGC
          1 CCGGGCCATGGCCTGGCT-TGGCTCGGACATGC

                   
       4071 CCGGGCC
          1 CCGGGCC

       4078 TTGTCTTGAT


Statistics
Matches: 32,  Mismatches: 6, Indels: 2
        0.80            0.15        0.05

Matches are distributed among these distances:
  31    4  0.12
  32   28  0.88

ACGTcount: A:0.07, C:0.32, G:0.39, T:0.21


Consensus pattern (32 bp):   
CCGGGCCATGGCCTGGCTTGGCTCGGACATGC
Done.