Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015254.1 Corchorus olitorius cultivar O-4 contig15287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65790

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3788--3829
22
2.0
22
86
9
61
47
2
4
45
1.36
5502--5541
15
2.6
15
88
4
53
62
12
10
15
1.54
21061--21089
1
29.0
1
100
0
58
100
0
0
0
0.00
21758--21794
16
2.2
16
90
4
56
48
0
27
24
1.51
40509--40556
17
2.8
17
80
0
60
8
10
0
81
0.88
40590--40674
33
2.5
33
98
1
161
8
45
36
9
1.66
44234--44313
42
1.9
42
97
0
151
33
6
20
40
1.77
52992--53021
6
5.0
6
100
0
60
50
33
16
0
1.46
53093--53117
6
4.2
6
100
0
50
16
52
0
32
1.44
57799--57846
23
2.1
23
100
0
96
18
33
25
22
1.97
60364--60388
2
12.5
2
100
0
50
52
0
0
48
1.00
62118--62147
2
14.5
2
93
6
51
50
3
0
46
1.18
62829--62879
26
1.9
27
96
4
95
52
11
0
35
1.38
62831--62881
16
3.6
16
65
29
51
50
11
0
37
1.39
63687--63722
18
1.9
18
94
5
63
75
0
16
8
1.04
63689--63722
6
5.5
6
89
3
50
76
0
17
5
0.98
63738--63787
10
5.4
9
77
18
50
74
0
26
0
0.83
63739--63786
16
3.0
17
88
8
66
77
0
22
0
0.78
63660--63768
46
2.3
46
86
9
150
62
10
22
5
1.47
63749--63786
5
8.0
5
82
11
53
78
0
21
0
0.74

Tables:   1

The End!