genome.fa.s15255.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015255.1 Corchorus olitorius cultivar O-4 contig15288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149554

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
781--1032	135	1.9	134	80	8	302	43	9	6	40	1.63
7575--7612	5	7.6	5	96	0	67	63	21	15	0	1.31
8124--8162	7	5.7	7	96	3	71	0	28	15	56	1.40
21152--21177	13	2.0	13	100	0	52	46	7	15	30	1.74
22375--22491	36	3.3	36	78	5	123	45	7	17	29	1.76
22293--22474	72	2.5	72	77	7	174	43	10	17	29	1.82
22392--22492	35	2.9	35	80	2	96	43	7	17	30	1.78
32119--32358	130	1.9	128	89	3	351	37	12	2	47	1.56
33081--33116	14	2.6	14	86	4	56	33	5	11	50	1.61
33146--33187	21	2.0	21	95	0	75	40	19	11	28	1.87
37488--37821	36	9.2	36	85	5	440	45	9	19	25	1.81
37488--37837	71	4.8	72	85	7	467	45	10	19	25	1.81
37501--37837	107	3.1	106	88	5	496	44	10	18	25	1.82
38262--38690	36	12.2	36	82	8	447	45	10	17	27	1.80
38262--38704	71	6.3	72	79	8	466	45	10	17	27	1.80
38346--38468	64	1.9	65	85	8	171	48	8	17	24	1.76
38262--38690	107	4.1	107	79	10	400	45	10	17	27	1.80
39847--39892	21	2.4	19	80	16	51	50	2	4	43	1.34
43638--43674	3	12.0	3	88	5	56	2	32	0	64	1.07
43641--43683	22	2.0	22	90	0	68	6	34	0	58	1.25
43720--43768	3	16.3	3	100	0	98	0	32	0	67	0.91
52504--52530	13	2.1	13	100	0	54	29	18	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54539--54724	87	2.1	85	80	9	198	35	15	10	39	1.81
54539--54717	22	8.2	22	74	13	147	36	15	9	39	1.79
57366--57426	32	1.9	32	93	6	106	54	1	16	27	1.52
57580--57841	128	2.0	130	84	5	341	36	10	2	50	1.52
58094--58123	15	1.9	16	93	6	53	53	0	3	43	1.17
69457--69503	16	3.1	16	75	9	53	74	14	10	0	1.07
69951--70070	58	2.1	56	84	7	152	55	1	13	29	1.47
78422--78460	16	2.4	16	95	0	69	48	5	23	23	1.70
79781--79822	21	2.0	21	85	0	57	28	26	14	30	1.95
79934--79975	21	2.0	21	95	0	75	35	28	16	19	1.93
84607--84637	9	3.4	9	90	0	53	25	0	67	6	1.14
90483--90519	11	3.1	12	88	11	58	56	0	2	40	1.13
90738--90784	21	2.2	22	78	17	55	55	0	0	44	0.99
90740--90781	13	3.1	14	90	6	61	54	0	0	45	0.99
92903--92933	8	3.9	8	95	0	53	54	0	19	25	1.44
92827--92982	85	1.8	85	83	8	210	48	0	13	37	1.47
93607--93632	2	13.0	2	100	0	52	50	0	0	50	1.00
105261--105330	29	2.4	29	92	0	122	44	18	30	7	1.76
105227--105375	76	2.0	76	87	0	217	44	17	27	10	1.80
105306--105344	18	2.2	18	86	9	53	46	20	25	7	1.77
105277--105419	47	3.0	47	88	2	207	44	19	27	7	1.78
108011--108042	16	2.0	16	100	0	64	56	6	0	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108646--108699	20	2.7	20	80	11	58	50	3	5	40	1.44
110687--110739	21	2.5	21	73	11	54	28	16	16	37	1.91
110837--111024	21	9.1	21	75	4	177	34	23	14	27	1.94
110859--111028	42	4.0	42	89	0	259	32	23	14	28	1.94
112224--112250	2	13.5	2	100	0	54	48	0	0	51	1.00
112628--112677	24	2.1	24	96	0	91	50	12	14	24	1.76
113008--113047	19	2.1	19	95	0	71	52	5	22	20	1.65
113296--113322	14	1.9	14	100	0	54	59	0	40	0	0.98
120630--120689	22	2.7	23	74	7	61	31	18	10	40	1.84
120783--120818	16	2.2	16	100	0	72	27	30	13	27	1.94
122937--122962	13	2.0	13	100	0	52	61	23	0	15	1.33
123499--123573	27	2.7	28	85	4	98	18	18	26	36	1.94
135726--135767	15	2.7	15	92	3	66	64	14	9	11	1.50
141855--141887	15	2.2	15	94	0	57	45	0	15	39	1.46
141992--142057	22	3.0	22	77	16	73	34	10	7	46	1.67
141992--142069	23	3.3	23	75	18	72	35	12	8	42	1.75
142367--142408	15	2.7	15	92	3	66	64	14	9	11	1.50

Tables:   1

The End!