Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015257.1 Corchorus olitorius cultivar O-4 contig15290, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3606
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34


Found at i:553 original size:26 final size:26

Alignment explanation


    Indices: 524--575  Score: 68
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        514 TTTTCTCAAA

                   *                  
        524 CTATTTTCTTAATCTCTAGTTTAATT
          1 CTATTTTATTAATCTCTAGTTTAATT

                      ** *            
        550 CTATTTTATTGTTTTCTAGTTTAATT
          1 CTATTTTATTAATCTCTAGTTTAATT

        576 TGCCTATTTT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.21, C:0.12, G:0.06, T:0.62


Consensus pattern (26 bp):   
CTATTTTATTAATCTCTAGTTTAATT
Done.