Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015259.1 Corchorus olitorius cultivar O-4 contig15292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6199
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:3958 original size:28 final size:28

Alignment explanation


    Indices: 3926--3990  Score: 112
    Period size: 28  Copynumber: 2.3  Consensus size: 28

       3916 GGCGATTTAG

                  *                     
       3926 TAATTTTACCCATCCAAGGGTAAAATTA
          1 TAATTTCACCCATCCAAGGGTAAAATTA

                       *                
       3954 TAATTTCACCCGTCCAAGGGTAAAATTA
          1 TAATTTCACCCATCCAAGGGTAAAATTA

                     
       3982 TAATTTCAC
          1 TAATTTCAC

       3991 TTACCAATTT


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  28   35  1.00

ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32


Consensus pattern (28 bp):   
TAATTTCACCCATCCAAGGGTAAAATTA
Done.